D. rerio Gene: lpgat1 - ENSDARG00000013542 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013542
Namelpgat1
Descriptionlysophosphatidylglycerol acyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2906]
OrganismDanio rerio (zebrafish)
Synonym(s)fc21c12, fj66b10, si:dkey-30h14.2, wu:fc21c12, wu:fj66b10, zgc:112278
Orthologs(s)21 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.73e3
  • 1.73e3
  • 2.13e3
  • 3.53e3
  • 3.92e3
94.19
  • 94.19
  • 92.86
  • 88.17
  • 86.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.50e3
  • 2.50e3
91.64
  • 91.64
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.47
  • 91.47
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.70e3
  • 2.70e3
  • 2.97e3
  • 4.49e3
  • 7.65e3
  • 7.77e3
90.96
  • 90.96
  • 90.04
  • 84.96
  • 74.38
  • 73.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.72e3
  • 2.72e3
90.90
  • 90.90
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
3.40e3
  • 3.40e3
  • 3.79e3
  • 4.15e3
  • 5.35e3
  • 5.77e3
  • 6.03e3
88.63
  • 88.63
  • 87.31
  • 86.11
  • 82.08
  • 80.68
  • 79.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.61e3
  • 3.61e3
87.90
  • 87.90
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.08e3
  • 4.08e3
86.34
  • 86.34
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.09e3
  • 4.09e3
86.30
  • 86.30
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.14e3
  • 4.14e3
  • 4.18e3
  • 4.27e3
  • 4.51e3
  • 4.57e3
  • 4.86e3
  • 4.91e3
  • 5.06e3
  • 5.09e3
  • 5.25e3
  • 5.57e3
  • 5.91e3
  • 6.08e3
  • 6.26e3
  • 1.48e4
  • 1.49e4
  • 1.50e4
86.15
  • 86.15
  • 86.01
  • 85.72
  • 84.90
  • 84.71
  • 83.75
  • 83.57
  • 83.05
  • 82.96
  • 82.41
  • 81.36
  • 80.21
  • 79.63
  • 79.05
  • 50.61
  • 50.25
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.18e3
  • 4.18e3
86.02
  • 86.02
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.35e3
  • 4.35e3
85.44
  • 85.44
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.89
  • 84.89
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.52e3
  • 4.52e3
84.88
  • 84.88
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.71e3
  • 4.71e3
  • 7.83e3
84.23
  • 84.23
  • 73.78
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.71e3
  • 4.71e3
84.22
  • 84.22
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.78e3
  • 4.78e3
83.99
  • 83.99
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
4.81e3
  • 4.81e3
  • 5.17e3
  • 5.26e3
  • 5.80e3
  • 6.14e3
  • 6.44e3
  • 6.76e3
  • 7.16e3
  • 7.35e3
  • 7.59e3
83.90
  • 83.90
  • 82.70
  • 82.40
  • 80.58
  • 79.44
  • 78.42
  • 77.38
  • 76.02
  • 75.40
  • 74.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.16e3
  • 5.16e3
82.73
  • 82.73
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.18e3
  • 5.18e3
82.66
  • 82.66
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.39e3
  • 5.39e3
  • 7.70e3
81.95
  • 81.95
  • 74.22
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.44e3
  • 5.44e3
81.77
  • 81.77
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.49e3
  • 5.49e3
81.63
  • 81.63
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
5.49e3
  • 5.49e3
  • 5.81e3
  • 6.36e3
81.61
  • 81.61
  • 80.54
  • 78.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.76e3
  • 5.76e3
80.72
  • 80.72
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.01e3
  • 7.01e3
76.55
  • 76.55
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.02e3
  • 7.02e3
  • 7.12e3
76.48
  • 76.48
  • 76.15
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.64e3
  • 7.64e3
74.41
  • 74.41
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.74e3
  • 7.74e3
74.09
  • 74.09
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.83e3
  • 7.83e3
73.79
  • 73.79
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.26e3
  • 8.26e3
72.36
  • 72.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species20 genesCompare expression
Bilateria20 species21 genesCompare expression

Orthology information comes from OMA : ENSDARG00000013542.

Cross-references

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