D. rerio Gene: slc4a4a - ENSDARG00000013730 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013730
Nameslc4a4a
Descriptionsolute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
OrganismDanio rerio (zebrafish)
Synonym(s)id:ibd2520, nbc1, nbce1, si:dkey-256m11.1, slc4a4
Orthologs(s)25 orthologs
Paralog(s)7 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.38e3
  • 1.38e3
95.37
  • 95.37
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
1.61e3
  • 1.61e3
  • 1.16e4
  • 1.35e4
  • 1.39e4
  • 1.72e4
94.61
  • 94.61
  • 61.18
  • 54.83
  • 53.31
  • 42.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000104life cycle
  • ZFS:0000031Pharyngula:Prim-25
2.13e3
  • 2.13e3
  • 1.36e4
  • 1.45e4
  • 1.81e4
92.87
  • 92.87
  • 54.53
  • 51.33
  • 39.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
  • 3.25e3
92.78
  • 92.78
  • 89.13
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
2.21e3
  • 2.21e3
  • 5.30e3
  • 5.55e3
  • 7.92e3
  • 8.45e3
  • 1.60e4
  • 1.75e4
  • 1.78e4
  • 1.78e4
  • 1.81e4
92.59
  • 92.59
  • 82.24
  • 81.41
  • 73.49
  • 71.71
  • 46.41
  • 41.29
  • 40.40
  • 40.27
  • 39.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.34e3
  • 3.34e3
88.82
  • 88.82
AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
3.73e3
  • 3.73e3
  • 5.97e3
  • 8.96e3
  • 1.31e4
  • 1.38e4
  • 1.49e4
87.50
  • 87.50
  • 80.00
  • 69.99
  • 56.24
  • 53.83
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009622pronephric proximal straight tubule
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
4.27e3
  • 4.27e3
  • 1.12e4
  • 1.12e4
  • 1.49e4
85.71
  • 85.71
  • 62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
4.64e3
  • 4.64e3
  • 6.87e3
  • 1.27e4
  • 1.34e4
  • 1.42e4
  • 1.75e4
84.45
  • 84.45
  • 77.00
  • 57.63
  • 55.19
  • 52.41
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.97e3
  • 4.97e3
83.36
  • 83.36
AEIR
  • AEIR
UBERON:0007298pronephric proximal convoluted tubule
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
4.98e3
  • 4.98e3
  • 9.96e3
  • 9.96e3
  • 1.19e4
  • 1.49e4
83.33
  • 83.33
  • 66.67
  • 66.67
  • 60.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.85e3
  • 6.85e3
  • 1.29e4
  • 1.50e4
77.08
  • 77.08
  • 56.80
  • 49.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.94e3
  • 6.94e3
76.76
  • 76.76
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
9.43e3
  • 9.43e3
  • 1.22e4
  • 1.74e4
68.41
  • 68.41
  • 59.03
  • 41.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.41
  • 65.41
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
  • 1.41e4
64.98
  • 64.98
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.23
  • 64.23
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.18
  • 63.18
AEIR
  • AEIR
UBERON:0003064intermediate mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.38
  • 60.38
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.43
  • 59.43
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000029Pharyngula:Prim-5
1.25e4
  • 1.25e4
58.30
  • 58.30
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.26e4
  • 1.26e4
57.92
  • 57.92
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.50e4
55.16
  • 55.16
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0005281ventricular system of central nervous system
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
1.50e4
  • 1.50e4
  • 1.50e4
  • 1.52e4
  • 1.57e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
  • 1.84e4
49.92
  • 49.92
  • 49.80
  • 49.19
  • 47.50
  • 40.62
  • 40.56
  • 40.55
  • 40.43
  • 40.38
  • 40.18
  • 39.85
  • 39.42
  • 38.72
  • 38.57
  • 38.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.01
  • 47.01
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.63e4
  • 1.63e4
45.27
  • 45.27
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.12
  • 45.12
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.10
  • 45.10
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.49
  • 42.49
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
33.87
  • 33.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000013730.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria7 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000013730.

Cross-references

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