D. rerio Gene: aldh3b1 - ENSDARG00000013839 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013839
Namealdh3b1
Descriptionaldehyde dehydrogenase 3 family, member B1 [Source:ZFIN;Acc:ZDB-GENE-021120-3]
OrganismDanio rerio (zebrafish)
Synonym(s)aldh3d1, cb508, etid35986.3, fb17d04, wu:fb17d04
Orthologs(s)30 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
1.95e3
  • 1.95e3
  • 2.59e3
  • 3.10e3
  • 3.59e3
  • 3.72e3
  • 3.91e3
93.46
  • 93.46
  • 91.34
  • 89.62
  • 87.99
  • 87.55
  • 86.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
  • ZFS:0000037Larval:Day 5
2.53e3
  • 2.53e3
  • 2.54e3
  • 2.58e3
  • 3.22e3
  • 3.97e3
  • 4.27e3
  • 5.37e3
  • 5.80e3
  • 8.62e3
  • 1.04e4
  • 1.14e4
  • 1.18e4
  • 1.18e4
  • 1.20e4
  • 1.38e4
  • 1.41e4
  • 1.47e4
  • 1.49e4
  • 1.51e4
91.54
  • 91.54
  • 91.49
  • 91.36
  • 89.24
  • 86.70
  • 85.71
  • 82.01
  • 80.60
  • 71.15
  • 65.15
  • 61.84
  • 60.43
  • 60.38
  • 59.86
  • 53.84
  • 52.87
  • 50.90
  • 49.95
  • 49.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.16e3
  • 3.16e3
89.43
  • 89.43
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.17e3
  • 3.17e3
89.37
  • 89.37
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
3.58e3
  • 3.58e3
  • 5.15e3
  • 5.22e3
  • 5.31e3
  • 5.92e3
  • 6.14e3
  • 7.14e3
  • 8.57e3
  • 1.18e4
  • 1.27e4
88.03
  • 88.03
  • 82.77
  • 82.51
  • 82.22
  • 80.17
  • 79.44
  • 76.11
  • 71.31
  • 60.51
  • 57.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.94e3
  • 3.94e3
  • 5.11e3
86.80
  • 86.80
  • 82.89
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
4.06e3
  • 4.06e3
  • 4.75e3
  • 5.19e3
  • 5.78e3
  • 6.23e3
86.40
  • 86.40
  • 84.08
  • 82.62
  • 80.66
  • 79.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.54e3
  • 4.54e3
84.79
  • 84.79
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.54e3
  • 5.54e3
81.46
  • 81.46
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.81e3
  • 5.81e3
80.56
  • 80.56
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.08e3
  • 6.08e3
79.63
  • 79.63
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.18e3
  • 6.18e3
79.30
  • 79.30
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.60e3
  • 7.60e3
74.54
  • 74.54
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.99e3
  • 7.99e3
73.24
  • 73.24
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.00e3
  • 8.00e3
73.22
  • 73.22
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.14e3
  • 8.14e3
72.76
  • 72.76
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.53e3
  • 8.53e3
71.46
  • 71.46
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.54e3
  • 8.54e3
  • 1.66e4
71.39
  • 71.39
  • 44.58
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
8.79e3
  • 8.79e3
  • 1.09e4
  • 1.25e4
70.57
  • 70.57
  • 63.45
  • 58.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.90e3
  • 8.90e3
70.19
  • 70.19
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.95e3
  • 8.95e3
70.03
  • 70.03
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.53e3
  • 9.53e3
68.10
  • 68.10
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.77e3
  • 9.77e3
67.29
  • 67.29
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.06e4
  • 1.06e4
64.65
  • 64.65
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.06e4
  • 1.06e4
  • 1.13e4
64.40
  • 64.40
  • 62.21
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
  • 1.49e4
61.60
  • 61.60
  • 49.95
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
  • 1.53e4
58.40
  • 58.40
  • 48.89
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
  • 1.32e4
55.86
  • 55.86
  • 55.86
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.88
  • 51.88
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.79
  • 49.79
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.01
  • 43.01
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta3 genesCompare expression
Eukaryota4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000013839.

Cross-references

EnsemblENSDARG00000013839 (aldh3b1)
ZFINZDB-GENE-021120-3 (aldh3b1)
EMBLAF254955, BX649502
Uniprot/SPTREMBLI3IT92, I3IT92_DANRE, Q90ZZ7, Q90ZZ7_DANRE

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