D. rerio Gene: sorl1 - ENSDARG00000013892 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013892
Namesorl1
Descriptionsortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7135957

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.77e3
  • 1.77e3
94.03444
  • 94.03444
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.20e3
  • 4.20e3
85.81223
  • 85.81223
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.28e3
  • 5.28e3
82.16176
  • 82.16176
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.69e3
  • 5.69e3
  • 7.56e3
80.76826
  • 80.76826
  • 74.46149
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
6.34e3
  • 6.34e3
  • 6.91e3
  • 7.89e3
  • 8.63e3
  • 8.88e3
  • 9.87e3
  • 1.07e4
78.56468
  • 78.56468
  • 76.65821
  • 73.32320
  • 70.82487
  • 69.98817
  • 66.65314
  • 63.87031
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.67e3
  • 6.67e3
77.45931
  • 77.45931
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.71e3
  • 6.71e3
77.31736
  • 77.31736
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
7.24e3
  • 7.24e3
  • 8.36e3
  • 9.26e3
  • 9.38e3
  • 9.98e3
75.52816
  • 75.52816
  • 71.75857
  • 68.72222
  • 68.31663
  • 66.26610
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.70e3
  • 7.70e3
73.97800
  • 73.97800
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.11e3
  • 8.11e3
72.60123
  • 72.60123
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.12e3
  • 8.12e3
72.55210
  • 72.55210
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.21e3
  • 9.21e3
68.86418
  • 68.86418
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.25e3
  • 9.25e3
68.73912
  • 68.73912
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.36e3
  • 9.36e3
68.38423
  • 68.38423
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.64e3
  • 9.64e3
67.40527
  • 67.40527
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.07e4
  • 1.07e4
  • 1.13e4
  • 1.15e4
63.87031
  • 63.87031
  • 61.74610
  • 61.09084
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
63.79092
  • 63.79092
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.60749
  • 61.60749
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
1.15e4
  • 1.15e4
61.09084
  • 61.09084
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.15e4
  • 1.15e4
  • 1.15e4
  • 1.18e4
61.09084
  • 61.09084
  • 61.09084
  • 59.97634
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.36742
  • 60.36742
AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000026Segmentation:14-19 somites
1.18e4
  • 1.18e4
59.98310
  • 59.98310
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
1.28e4
  • 1.28e4
56.85769
  • 56.85769
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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