D. rerio Gene: XRCC2 - ENSDARG00000013933 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013933
NameXRCC2
DescriptionX-ray repair complementing defective repair in Chinese hamster cells 2 [Source:HGNC Symbol;Acc:HGNC:12829]
OrganismDanio rerio (zebrafish)
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.02
  • 84.02
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.15e3
  • 6.15e3
79.40
  • 79.40
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.87e3
  • 8.87e3
70.29
  • 70.29
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.60
  • 63.60
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.24
  • 63.24
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.82
  • 62.82
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.15
  • 62.15
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.15e4
  • 1.15e4
  • 1.61e4
61.36
  • 61.36
  • 46.01
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.57e4
  • 1.57e4
47.54
  • 47.54
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.60e4
  • 1.60e4
46.28
  • 46.28
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.63e4
  • 1.63e4
  • 1.63e4
45.58
  • 45.58
  • 45.50
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.65e4
  • 1.65e4
  • 1.72e4
  • 1.87e4
  • 2.26e4
44.67
  • 44.67
  • 42.30
  • 37.24
  • 24.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.29
  • 44.29
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.35
  • 43.35
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.72e4
  • 1.72e4
42.52
  • 42.52
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.85e4
  • 1.85e4
  • 2.10e4
38.19
  • 38.19
  • 29.66
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.04
  • 36.04
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.84
  • 32.84
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.04
  • 28.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000013933 (XRCC2)
HGNCHGNC:12829 (XRCC2)
EMBLCU466274
Uniprot/SPTREMBLF1Q9N3, F1Q9N3_DANRE

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