D. rerio Gene: pdf - ENSDARG00000013950 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013950
Namepdf
Descriptionpeptide deformylase (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050913-42]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:114141
Orthologs(s)22 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.20e3
  • 6.20e3
  • 1.50e4
79.23
  • 79.23
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.44e3
  • 6.44e3
  • 8.07e3
78.43
  • 78.43
  • 72.97
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
6.69e3
  • 6.69e3
  • 8.83e3
77.59
  • 77.59
  • 70.44
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
6.84e3
  • 6.84e3
  • 8.07e3
  • 1.02e4
  • 1.17e4
  • 1.27e4
77.11
  • 77.11
  • 72.99
  • 65.68
  • 60.72
  • 57.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.32e3
  • 7.32e3
75.48
  • 75.48
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.87e3
  • 7.87e3
73.66
  • 73.66
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.03e3
  • 8.03e3
73.11
  • 73.11
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.09e3
  • 8.09e3
72.92
  • 72.92
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.64e3
  • 8.64e3
71.06
  • 71.06
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.00e3
  • 9.00e3
  • 1.23e4
69.86
  • 69.86
  • 58.89
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.10e3
  • 9.10e3
69.52
  • 69.52
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.24e3
  • 9.24e3
69.05
  • 69.05
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.29e3
  • 9.29e3
68.91
  • 68.91
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.51e3
  • 9.51e3
  • 9.92e3
68.17
  • 68.17
  • 66.79
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.31
  • 66.31
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.39
  • 65.39
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.39
  • 64.39
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.50
  • 63.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.15
  • 63.15
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.11
  • 62.11
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.17e4
  • 1.17e4
  • 1.28e4
60.93
  • 60.93
  • 57.18
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.94
  • 58.94
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.36e4
  • 1.36e4
54.37
  • 54.37
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.33
  • 51.33
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.80
  • 45.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi10 species10 genesCompare expression
Bilateria16 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000013950.

Cross-references

EnsemblENSDARG00000013950 (pdf)
ZFINZDB-GENE-050913-42 (pdf)
EMBLBC097196, CT025859
Uniprot/SPTREMBLQ4V8U4, Q4V8U4_DANRE

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