D. rerio Gene: slc31a1 - ENSDARG00000013961 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000013961
Nameslc31a1
Descriptionsolute carrier family 31 (copper transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-040415-3]
OrganismDanio rerio (zebrafish)
Synonym(s)ctr-1, ctr1, zgc:76839
Orthologs(s)36 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
888
  • 888
  • 1.03e3
  • 1.03e3
  • 1.07e3
  • 1.55e3
  • 1.73e3
  • 2.20e3
  • 2.34e3
  • 2.56e3
  • 3.29e3
  • 4.05e3
  • 4.39e3
  • 5.01e3
  • 5.20e3
  • 9.96e3
97.03
  • 97.03
  • 96.56
  • 96.55
  • 96.41
  • 94.81
  • 94.22
  • 92.64
  • 92.17
  • 91.44
  • 88.99
  • 86.43
  • 85.32
  • 83.22
  • 82.59
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.21e3
  • 1.21e3
  • 1.49e3
  • 1.53e3
  • 1.61e3
  • 2.27e3
  • 3.59e3
95.95
  • 95.95
  • 95.03
  • 94.89
  • 94.62
  • 92.39
  • 87.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.53e3
  • 1.53e3
  • 1.60e3
  • 2.14e3
  • 3.24e3
  • 4.07e3
  • 4.53e3
  • 5.40e3
  • 6.24e3
  • 7.43e3
  • 8.07e3
94.87
  • 94.87
  • 94.65
  • 92.84
  • 89.14
  • 86.39
  • 84.83
  • 81.91
  • 79.11
  • 75.14
  • 72.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.66e3
  • 1.66e3
94.46
  • 94.46
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.73e3
  • 1.73e3
94.21
  • 94.21
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.94e3
  • 1.94e3
  • 5.26e3
93.50
  • 93.50
  • 82.38
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.02e3
  • 2.02e3
93.26
  • 93.26
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.21e3
  • 2.21e3
92.61
  • 92.61
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
3.20e3
  • 3.20e3
  • 4.59e3
  • 4.83e3
  • 4.97e3
  • 5.29e3
89.29
  • 89.29
  • 84.64
  • 83.84
  • 83.37
  • 82.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.35e3
  • 3.35e3
  • 3.97e3
  • 4.27e3
88.77
  • 88.77
  • 86.72
  • 85.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.39e3
  • 3.39e3
88.66
  • 88.66
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.65e3
  • 3.65e3
  • 3.86e3
  • 4.41e3
  • 1.19e4
87.78
  • 87.78
  • 87.07
  • 85.24
  • 60.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.78e3
  • 3.78e3
87.35
  • 87.35
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.80e3
  • 3.80e3
  • 9.91e3
87.27
  • 87.27
  • 66.83
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.05e3
  • 4.05e3
86.43
  • 86.43
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.35e3
  • 4.35e3
85.43
  • 85.43
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.45e3
  • 4.45e3
85.10
  • 85.10
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.61e3
  • 4.61e3
84.55
  • 84.55
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.79e3
  • 4.79e3
83.96
  • 83.96
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.50e3
  • 6.50e3
  • 8.76e3
78.25
  • 78.25
  • 70.68
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.70e3
  • 6.70e3
77.56
  • 77.56
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
77.32
  • 77.32
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.21e3
  • 8.21e3
72.51
  • 72.51
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.74e3
  • 8.74e3
  • 9.76e3
70.74
  • 70.74
  • 67.31
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.75e3
  • 8.75e3
70.70
  • 70.70
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.28e3
  • 9.28e3
68.92
  • 68.92
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.56e3
  • 9.56e3
67.99
  • 67.99
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.56e3
  • 9.56e3
67.98
  • 67.98
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.46
  • 66.46
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.48
  • 64.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria24 species36 genesCompare expression

Orthology information comes from OMA : ENSDARG00000013961.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eumetazoa1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000013961.

Cross-references

EnsemblENSDARG00000013961 (slc31a1)
ZFINZDB-GENE-040415-3 (slc31a1)
EMBLFP017233
Uniprot/SPTREMBLF1QKH1, F1QKH1_DANRE

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