D. rerio Gene: smarcad1a - ENSDARG00000014041 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014041
Namesmarcad1a
DescriptionSWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 a [Source:ZFIN;Acc:ZDB-GENE-050522-499]
OrganismDanio rerio (zebrafish)
Synonym(s)smarcad1, wu:fi25c01, zgc:113183
Orthologs(s)24 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
476
  • 476
98.41
  • 98.41
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
494
  • 494
98.35
  • 98.35
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
539
  • 539
98.20
  • 98.20
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
598
  • 598
  • 3.11e3
  • 3.33e3
  • 3.37e3
  • 3.63e3
  • 3.92e3
  • 4.08e3
  • 4.19e3
  • 4.33e3
  • 4.60e3
  • 5.51e3
  • 5.56e3
  • 7.79e3
  • 9.20e3
  • 1.44e4
  • 1.46e4
  • 1.50e4
98.00
  • 98.00
  • 89.58
  • 88.85
  • 88.71
  • 87.86
  • 86.87
  • 86.33
  • 85.96
  • 85.50
  • 84.60
  • 81.55
  • 81.40
  • 73.93
  • 69.20
  • 51.82
  • 51.12
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
682
  • 682
97.72
  • 97.72
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
776
  • 776
  • 1.06e3
  • 1.28e3
  • 3.84e3
  • 5.05e3
97.40
  • 97.40
  • 96.45
  • 95.71
  • 87.14
  • 83.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.64e3
  • 1.64e3
  • 2.96e3
  • 5.72e3
  • 8.71e3
94.52
  • 94.52
  • 90.08
  • 80.85
  • 70.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.34e3
  • 2.34e3
92.15
  • 92.15
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
2.37e3
  • 2.37e3
  • 2.77e3
  • 3.20e3
  • 3.28e3
  • 3.32e3
  • 3.35e3
  • 3.71e3
  • 3.86e3
  • 4.37e3
  • 6.33e3
92.07
  • 92.07
  • 90.72
  • 89.30
  • 89.03
  • 88.88
  • 88.77
  • 87.59
  • 87.06
  • 85.36
  • 78.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.59
  • 90.59
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.86e3
  • 2.86e3
90.43
  • 90.43
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.52e3
  • 3.52e3
  • 7.66e3
88.21
  • 88.21
  • 74.37
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.69e3
  • 3.69e3
87.65
  • 87.65
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.01e3
  • 4.01e3
86.57
  • 86.57
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.29e3
  • 4.29e3
85.62
  • 85.62
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
4.33e3
  • 4.33e3
  • 4.55e3
  • 4.77e3
  • 5.69e3
  • 6.11e3
  • 6.43e3
85.52
  • 85.52
  • 84.75
  • 84.02
  • 80.96
  • 79.53
  • 78.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.89e3
  • 4.89e3
83.63
  • 83.63
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.97e3
  • 4.97e3
  • 1.03e4
83.35
  • 83.35
  • 65.64
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.22
  • 80.22
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.11e3
  • 6.11e3
79.55
  • 79.55
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.36e3
  • 6.36e3
78.72
  • 78.72
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.57e3
  • 6.57e3
  • 7.71e3
78.00
  • 78.00
  • 74.19
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
  • 9.44e3
77.31
  • 77.31
  • 68.40
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.32e3
  • 7.32e3
  • 8.51e3
  • 1.05e4
75.50
  • 75.50
  • 71.51
  • 64.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.75e3
  • 7.75e3
74.06
  • 74.06
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.17e3
  • 8.17e3
72.66
  • 72.66
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
70.59
  • 70.59
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.50e3
  • 9.50e3
68.21
  • 68.21
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
67.41
  • 67.41
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.25
  • 63.25
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.15
  • 58.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000014041.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Opisthokonta3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000014041.

Cross-references

EnsemblENSDARG00000014041 (smarcad1a)
ZFINZDB-GENE-050522-499 (smarcad1a)
EMBLAL807792
Uniprot/SPTREMBLB0R060, B0R060_DANRE, F6NTX5, F6NTX5_DANRE
Uniprot/SWISSPROTB0R061, SMRDA_DANRE

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