D. rerio Gene: pgam1b - ENSDARG00000014068 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014068
Namepgam1b
Descriptionphosphoglycerate mutase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5376]
OrganismDanio rerio (zebrafish)
Synonym(s)fd15c02, pgam1lb, wu:fd15c02, zgc:63722

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
717
  • 717
  • 6.05e3
  • 1.48e4
97.57999
  • 97.57999
  • 79.56045
  • 49.94254
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
859
  • 859
  • 1.45e3
97.10031
  • 97.10031
  • 95.08898
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
903
  • 903
  • 7.71e3
  • 1.06e4
96.95055
  • 96.95055
  • 73.93045
  • 64.03755
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
945
  • 945
  • 1.69e3
  • 2.02e3
  • 2.33e3
  • 2.56e3
  • 4.15e3
  • 4.80e3
  • 6.77e3
  • 8.44e3
  • 8.73e3
  • 9.89e3
  • 1.06e4
  • 1.08e4
  • 1.08e4
  • 1.42e4
  • 1.45e4
  • 1.49e4
96.80810
  • 96.80810
  • 94.29070
  • 93.16024
  • 92.13052
  • 91.35315
  • 85.98983
  • 83.77405
  • 77.13408
  • 71.46523
  • 70.48432
  • 66.58535
  • 64.14807
  • 63.49442
  • 63.37457
  • 51.99138
  • 50.89926
  • 49.79382
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.40e3
  • 1.40e3
  • 1.61e3
  • 2.18e3
95.25858
  • 95.25858
  • 94.56428
  • 92.63330
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.73e3
  • 1.73e3
94.15612
  • 94.15612
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.84e3
  • 1.84e3
93.77757
  • 93.77757
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.87e3
  • 1.87e3
  • 3.76e3
  • 6.85e3
  • 7.66e3
  • 8.59e3
  • 8.93e3
  • 9.69e3
  • 1.18e4
  • 1.22e4
  • 1.24e4
93.68347
  • 93.68347
  • 87.29774
  • 76.85093
  • 74.11608
  • 70.97325
  • 69.80734
  • 67.25611
  • 60.02153
  • 58.62789
  • 58.13641
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.88e3
  • 1.88e3
93.64575
  • 93.64575
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
93.11172
  • 93.11172
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.03353
  • 92.03353
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.45e3
  • 2.45e3
91.72596
  • 91.72596
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.60e3
  • 2.60e3
91.22911
  • 91.22911
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.85e3
  • 2.85e3
  • 9.36e3
90.35612
  • 90.35612
  • 68.38246
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.04230
  • 89.04230
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
3.26e3
  • 3.26e3
  • 3.80e3
  • 4.98e3
88.99823
  • 88.99823
  • 87.16367
  • 83.17057
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.40e3
  • 3.40e3
88.51148
  • 88.51148
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.52e3
  • 3.52e3
88.09863
  • 88.09863
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.08163
  • 87.08163
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.83e3
  • 3.83e3
87.04720
  • 87.04720
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
84.85458
  • 84.85458
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
5.51e3
  • 5.51e3
  • 7.14e3
  • 7.33e3
  • 9.89e3
  • 1.11e4
81.38499
  • 81.38499
  • 75.88272
  • 75.22022
  • 66.55985
  • 62.59321
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.59e3
  • 5.59e3
81.09860
  • 81.09860
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.34e3
  • 6.34e3
  • 6.34e3
  • 6.34e3
  • 6.58e3
  • 6.83e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.89e3
  • 8.46e3
  • 8.46e3
  • 8.63e3
  • 8.71e3
  • 8.71e3
  • 8.88e3
  • 8.88e3
  • 9.05e3
  • 9.05e3
  • 9.05e3
  • 9.62e3
  • 9.87e3
  • 9.87e3
78.56975
  • 78.56975
  • 78.56975
  • 78.56975
  • 77.77439
  • 76.91633
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 74.99829
  • 73.32320
  • 71.42518
  • 71.41166
  • 70.82487
  • 70.57472
  • 70.57472
  • 69.98817
  • 69.98310
  • 69.42923
  • 69.42923
  • 69.42923
  • 67.48142
  • 66.65990
  • 66.65314
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.44e3
  • 6.44e3
78.22740
  • 78.22740
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.69e3
  • 9.69e3
67.23999
  • 67.23999
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.18e4
  • 1.18e4
60.04378
  • 60.04378
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.29e4
  • 1.29e4
56.56641
  • 56.56641
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.33e4
  • 1.33e4
55.16372
  • 55.16372
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX119918
EnsemblENSDARG00000014068 (pgam1b)
Uniprot/SPTREMBLB8A4H6, B8A4H6_DANRE
ZFINZDB-GENE-030131-5376 (pgam1b)

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