D. rerio Gene: srp72 - ENSDARG00000014139 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014139
Namesrp72
Descriptionsignal recognition particle 72 [Source:ZFIN;Acc:ZDB-GENE-030131-5546]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fi03d11
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
1.19e3
  • 1.19e3
  • 1.53e3
  • 1.69e3
  • 2.34e3
  • 2.94e3
  • 3.03e3
  • 3.06e3
  • 3.27e3
  • 3.70e3
  • 5.41e3
96.02
  • 96.02
  • 94.89
  • 94.36
  • 92.17
  • 90.15
  • 89.87
  • 89.75
  • 89.04
  • 87.60
  • 81.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.36e3
  • 1.36e3
  • 2.06e3
  • 3.99e3
  • 5.17e3
  • 5.76e3
95.46
  • 95.46
  • 93.10
  • 86.64
  • 82.70
  • 80.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
1.40e3
  • 1.40e3
  • 1.79e3
  • 2.95e3
  • 4.56e3
  • 5.03e3
  • 5.41e3
95.31
  • 95.31
  • 93.99
  • 90.13
  • 84.72
  • 83.16
  • 81.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
95.20
  • 95.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
93.07
  • 93.07
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.11e3
  • 2.11e3
92.93
  • 92.93
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
92.87
  • 92.87
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
92.28
  • 92.28
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
  • 5.22e3
91.72
  • 91.72
  • 82.52
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
2.48e3
  • 2.48e3
  • 2.73e3
  • 2.91e3
  • 2.94e3
  • 3.14e3
  • 3.25e3
  • 3.25e3
  • 3.25e3
  • 3.56e3
  • 3.56e3
  • 3.78e3
  • 3.80e3
  • 4.39e3
  • 4.57e3
91.69
  • 91.69
  • 90.85
  • 90.27
  • 90.15
  • 89.50
  • 89.13
  • 89.11
  • 89.10
  • 88.10
  • 88.07
  • 87.36
  • 87.28
  • 85.30
  • 84.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.62e3
  • 2.62e3
91.25
  • 91.25
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.67e3
  • 2.67e3
91.07
  • 91.07
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.72e3
  • 2.72e3
  • 3.12e3
  • 4.73e3
90.90
  • 90.90
  • 89.55
  • 84.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.73e3
  • 2.73e3
90.85
  • 90.85
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.74e3
  • 2.74e3
90.82
  • 90.82
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.68
  • 90.68
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.88e3
  • 2.88e3
90.35
  • 90.35
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.90e3
  • 2.90e3
  • 6.24e3
90.29
  • 90.29
  • 79.12
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.90e3
  • 2.90e3
90.28
  • 90.28
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.95e3
  • 2.95e3
90.11
  • 90.11
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.00e3
  • 3.00e3
89.97
  • 89.97
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.24e3
  • 3.24e3
89.16
  • 89.16
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.68
  • 88.68
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.43e3
  • 3.43e3
88.53
  • 88.53
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.43e3
  • 3.43e3
88.52
  • 88.52
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.75e3
  • 3.75e3
  • 4.62e3
87.43
  • 87.43
  • 84.52
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
3.77e3
  • 3.77e3
  • 4.35e3
  • 5.02e3
  • 5.61e3
87.39
  • 87.39
  • 85.43
  • 83.20
  • 81.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
85.51
  • 85.51
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.80e3
  • 4.80e3
83.95
  • 83.95
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.86e3
  • 4.86e3
  • 5.12e3
83.75
  • 83.75
  • 82.85
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.74e3
  • 5.74e3
80.79
  • 80.79
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.06e3
  • 6.06e3
79.70
  • 79.70
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.05e3
  • 9.05e3
69.70
  • 69.70
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.16
  • 66.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000014139.

Cross-references

EnsemblENSDARG00000014139 (srp72)
ZFINZDB-GENE-030131-5546 (srp72)
Uniprot/SPTREMBLF1QDJ9, F1QDJ9_DANRE

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