D. rerio Gene: ercc4 - ENSDARG00000014161 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014161
Nameercc4
Descriptionexcision repair cross-complementation group 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5533]
OrganismDanio rerio (zebrafish)
Synonym(s)fi03a05, wu:fi03a05, xpf, zgc:63468
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.12e3
  • 2.12e3
92.90
  • 92.90
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.33e3
  • 2.33e3
92.19
  • 92.19
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
4.04e3
  • 4.04e3
  • 9.88e3
86.48
  • 86.48
  • 66.93
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.93e3
  • 5.93e3
80.14
  • 80.14
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.96e3
  • 6.96e3
76.70
  • 76.70
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.24e3
  • 8.24e3
72.40
  • 72.40
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.79e3
  • 9.79e3
67.21
  • 67.21
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.02e4
  • 1.02e4
  • 1.28e4
65.99
  • 65.99
  • 57.17
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.04e4
  • 1.04e4
  • 1.59e4
65.08
  • 65.08
  • 46.64
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.06e4
  • 1.06e4
  • 1.06e4
  • 1.09e4
  • 1.24e4
  • 1.56e4
64.48
  • 64.48
  • 64.38
  • 63.40
  • 58.45
  • 47.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.28
  • 63.28
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
  • 1.29e4
62.20
  • 62.20
  • 56.80
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.23
  • 61.23
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
  • 1.50e4
61.18
  • 61.18
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.91
  • 59.91
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.66
  • 59.66
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.03
  • 59.03
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.94
  • 58.94
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.62
  • 57.62
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.53
  • 56.53
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.40
  • 56.40
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.70
  • 55.70
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.44
  • 55.44
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
  • 1.81e4
53.43
  • 53.43
  • 39.34
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species19 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000014161.

Cross-references

EnsemblENSDARG00000014161 (ercc4)
ZFINZDB-GENE-030131-5533 (ercc4)
EMBLCU302252
Uniprot/SPTREMBLF1QK90, F1QK90_DANRE

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