D. rerio Gene: myl1 - ENSDARG00000014196 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014196
Namemyl1
Descriptionmyosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
OrganismDanio rerio (zebrafish)
Synonym(s)fj53a11, wu:fj53a11, zgc:65785, zgc:77231
Orthologs(s)12 orthologs
Paralog(s)49 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
28.0
  • 28.0
99.91
  • 99.91
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
46.0
  • 46.0
99.85
  • 99.85
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
51.0
  • 51.0
99.83
  • 99.83
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
51.8
  • 51.8
  • 125
  • 133
  • 164
  • 238
  • 356
  • 540
  • 1.16e4
  • 1.17e4
  • 1.29e4
  • 1.32e4
  • 1.45e4
  • 1.61e4
  • 1.66e4
99.83
  • 99.83
  • 99.59
  • 99.56
  • 99.45
  • 99.21
  • 98.81
  • 98.19
  • 61.10
  • 60.73
  • 56.79
  • 55.67
  • 51.56
  • 46.05
  • 44.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
63.2
  • 63.2
  • 89.1
  • 99.0
  • 129
  • 138
  • 158
  • 195
  • 1.25e3
  • 1.23e4
99.79
  • 99.79
  • 99.71
  • 99.67
  • 99.57
  • 99.54
  • 99.47
  • 99.35
  • 95.82
  • 58.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
68.3
  • 68.3
99.77
  • 99.77
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
92.0
  • 92.0
  • 106
  • 169
99.70
  • 99.70
  • 99.65
  • 99.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
265
  • 265
  • 3.72e3
99.12
  • 99.12
  • 87.55
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
436
  • 436
98.54
  • 98.54
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
574
  • 574
98.08
  • 98.08
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
857
  • 857
  • 6.32e3
  • 1.47e4
97.13
  • 97.13
  • 78.83
  • 50.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.05e3
  • 1.05e3
96.50
  • 96.50
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
2.49e3
  • 2.49e3
  • 8.40e3
91.67
  • 91.67
  • 71.86
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
  • 1.80e4
91.49
  • 91.49
  • 39.75
AEIR
  • AEIR
  • AEIR
UBERON:0008897fin
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
3.73e3
  • 3.73e3
  • 5.97e3
87.50
  • 87.50
  • 80.00
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
4.91e3
  • 4.91e3
83.55
  • 83.55
AEIR
  • AEIR
UBERON:0001774skeletal muscle of trunk
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0003097dorsal fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
  • 4.98e3
83.34
  • 83.34
  • 83.34
AEIR
  • AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
6.64e3
  • 6.64e3
  • 7.47e3
  • 8.53e3
  • 9.96e3
77.77
  • 77.77
  • 74.99
  • 71.43
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
76.29
  • 76.29
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 8.30e3
  • 8.96e3
  • 9.13e3
  • 1.05e4
  • 1.12e4
  • 1.16e4
  • 1.18e4
  • 1.25e4
75.00
  • 75.00
  • 72.21
  • 69.98
  • 69.43
  • 64.99
  • 62.48
  • 61.09
  • 60.50
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
8.35e3
  • 8.35e3
  • 1.75e4
72.06
  • 72.06
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.33e3
  • 1.08e4
  • 1.18e4
  • 1.20e4
  • 1.25e4
70.00
  • 70.00
  • 68.74
  • 63.76
  • 60.39
  • 59.98
  • 58.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008229craniocervical region musculature
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 1.05e4
  • 1.12e4
70.00
  • 70.00
  • 64.99
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.53e3
  • 9.53e3
68.08
  • 68.08
AEIR
  • AEIR
UBERON:0003895hypaxial myotome region
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 9.96e3
66.66
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.02e4
  • 1.02e4
  • 1.02e4
  • 1.07e4
65.77
  • 65.77
  • 65.77
  • 64.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.30e4
  • 1.30e4
56.39
  • 56.39
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.47
  • 55.47
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.37e4
  • 1.37e4
54.18
  • 54.18
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.11
  • 51.11
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
29.04
  • 29.04
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.26e4
  • 2.26e4
24.27
  • 24.27
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Deuterostomia7 genesCompare expression
Eukaryota49 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000014196.

Cross-references

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