D. rerio Gene: spaw - ENSDARG00000014309 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014309
Namespaw
Descriptionsouthpaw [Source:ZFIN;Acc:ZDB-GENE-030219-1]
OrganismDanio rerio (zebrafish)
Synonym(s)ndr3, unm s457, unm t30973, unm_s457, unm_t30973

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003081lateral plate mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.66e3
  • 1.66e3
  • 1.87e3
  • 2.13e3
  • 9.96e3
94.44610
  • 94.44610
  • 93.75167
  • 92.85882
  • 66.66668
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000001Kupffer's vesicle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.87e3
  • 1.87e3
  • 5.75e3
  • 1.26e4
93.75167
  • 93.75167
  • 80.76422
  • 57.67723
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0001065lateral mesoderm (Danio)
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
3.73e3
  • 3.73e3
  • 4.98e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
87.50166
  • 87.50166
  • 83.33500
  • 49.99833
  • 49.99330
  • 49.99330
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
  • 6.54e3
  • 1.77e4
  • 1.78e4
  • 1.79e4
  • 1.81e4
  • 1.83e4
83.32830
  • 83.32830
  • 78.11663
  • 40.62177
  • 40.36165
  • 40.18310
  • 39.42320
  • 38.62261
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.02e4
  • 1.02e4
  • 1.09e4
  • 1.33e4
  • 1.33e4
  • 1.41e4
65.77105
  • 65.77105
  • 63.62633
  • 55.53213
  • 55.53213
  • 52.75267
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.49831
  • 62.49831
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.16e4
  • 1.16e4
  • 1.35e4
  • 1.36e4
  • 1.68e4
61.09102
  • 61.09102
  • 54.73345
  • 54.51532
  • 43.62907
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009910posterior lateral plate mesoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.28e4
  • 1.28e4
  • 1.49e4
57.13616
  • 57.13616
  • 49.99330
AEIR
  • AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
  • 1.41e4
56.24164
  • 56.24164
  • 52.91772
AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.32e4
  • 1.32e4
  • 1.33e4
55.86060
  • 55.86060
  • 55.53213
AEIR
  • AEIR
  • AEIR
UBERON:0009881anterior lateral plate mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
UBERON:2007031anterior neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99833
  • 49.99833
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
49.99665
  • 49.99665
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73000
  • 44.73000
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.75e4
  • 1.75e4
  • 1.78e4
  • 1.78e4
  • 1.88e4
  • 2.04e4
  • 2.18e4
  • 2.44e4
41.29475
  • 41.29475
  • 40.40106
  • 40.26876
  • 36.88785
  • 31.70479
  • 26.87389
  • 18.37103
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77005
  • 40.77005
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
  • 1.93e4
39.84288
  • 39.84288
  • 35.31122
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
24.04537
  • 24.04537
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000014309 (spaw)
Uniprot/SPTREMBLF1QX69, F1QX69_DANRE
ZFINZDB-GENE-030219-1 (spaw)

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