D. rerio Gene: npm1a - ENSDARG00000014329 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014329
Namenpm1a
Descriptionnucleophosmin 1a (nucleolar phosphoprotein B23, numatrin) [Source:ZFIN;Acc:ZDB-GENE-021028-1]
OrganismDanio rerio (zebrafish)
Synonym(s)npm1, sb:cb487
Orthologs(s)52 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
62.4
  • 62.4
  • 88.4
  • 100
  • 105
  • 112
  • 129
99.79
  • 99.79
  • 99.71
  • 99.67
  • 99.65
  • 99.63
  • 99.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
74.0
  • 74.0
  • 92.2
  • 95.0
  • 311
  • 353
99.76
  • 99.76
  • 99.69
  • 99.69
  • 98.96
  • 98.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
87.6
  • 87.6
  • 5.23e3
  • 5.23e3
  • 5.60e3
  • 8.83e3
  • 9.28e3
  • 9.34e3
99.71
  • 99.71
  • 82.49
  • 82.49
  • 81.24
  • 70.44
  • 68.94
  • 68.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
90.4
  • 90.4
99.70
  • 99.70
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • UBERON:0000109gastrula stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
122
  • 122
  • 126
  • 138
  • 146
  • 208
  • 217
  • 313
  • 408
  • 546
  • 571
  • 714
  • 1.01e3
  • 1.10e3
  • 2.30e3
  • 2.59e3
  • 8.30e3
  • 1.09e4
  • 1.19e4
  • 1.23e4
  • 1.35e4
99.60
  • 99.60
  • 99.58
  • 99.54
  • 99.51
  • 99.31
  • 99.28
  • 98.95
  • 98.64
  • 98.18
  • 98.09
  • 97.61
  • 96.61
  • 96.32
  • 92.31
  • 91.31
  • 72.21
  • 63.34
  • 60.00
  • 58.76
  • 54.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
138
  • 138
99.54
  • 99.54
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
155
  • 155
99.49
  • 99.49
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
178
  • 178
99.41
  • 99.41
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
218
  • 218
99.27
  • 99.27
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
221
  • 221
99.26
  • 99.26
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
235
  • 235
  • 261
  • 267
  • 279
  • 287
  • 303
  • 598
  • 638
  • 672
  • 739
99.22
  • 99.22
  • 99.13
  • 99.11
  • 99.07
  • 99.04
  • 98.99
  • 98.00
  • 97.87
  • 97.75
  • 97.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
317
  • 317
  • 1.45e4
98.94
  • 98.94
  • 51.36
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
400
  • 400
  • 1.41e4
98.66
  • 98.66
  • 52.81
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
447
  • 447
98.51
  • 98.51
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
474
  • 474
98.42
  • 98.42
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
477
  • 477
98.41
  • 98.41
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
478
  • 478
  • 1.29e3
98.40
  • 98.40
  • 95.67
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
572
  • 572
98.09
  • 98.09
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
601
  • 601
  • 1.22e3
97.99
  • 97.99
  • 95.93
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
614
  • 614
  • 1.01e3
  • 1.48e3
  • 5.85e3
  • 6.72e3
  • 6.78e3
97.95
  • 97.95
  • 96.63
  • 95.05
  • 80.42
  • 77.49
  • 77.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
712
  • 712
97.62
  • 97.62
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
726
  • 726
97.57
  • 97.57
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
747
  • 747
97.50
  • 97.50
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
766
  • 766
  • 2.49e3
  • 3.98e3
  • 5.60e3
  • 7.12e3
97.44
  • 97.44
  • 91.67
  • 86.66
  • 81.24
  • 76.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
797
  • 797
  • 940
  • 1.18e3
97.34
  • 97.34
  • 96.86
  • 96.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
837
  • 837
97.20
  • 97.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
854
  • 854
97.14
  • 97.14
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
889
  • 889
97.03
  • 97.03
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
926
  • 926
  • 3.98e3
  • 1.22e4
  • 1.34e4
  • 1.49e4
96.90
  • 96.90
  • 86.68
  • 59.08
  • 54.99
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.20e3
  • 1.20e3
  • 1.27e3
95.98
  • 95.98
  • 95.76
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.21e3
  • 1.21e3
95.94
  • 95.94
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
95.48
  • 95.48
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.10e3
  • 2.10e3
92.97
  • 92.97
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.15e3
  • 2.15e3
92.81
  • 92.81
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
3.73e3
  • 3.73e3
  • 3.98e3
  • 3.98e3
87.50
  • 87.50
  • 86.66
  • 86.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
3.98e3
  • 3.98e3
  • 4.67e3
86.66
  • 86.66
  • 84.37
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
4.27e3
  • 4.27e3
85.71
  • 85.71
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.27e3
  • 4.27e3
  • 4.72e3
  • 4.72e3
  • 5.81e3
  • 5.81e3
  • 6.15e3
  • 6.29e3
85.71
  • 85.71
  • 84.20
  • 84.20
  • 80.55
  • 80.55
  • 79.40
  • 78.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
4.39e3
  • 4.39e3
  • 4.72e3
  • 5.69e3
  • 5.81e3
85.29
  • 85.29
  • 84.20
  • 80.94
  • 80.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.48e3
  • 4.48e3
  • 4.72e3
  • 4.72e3
84.99
  • 84.99
  • 84.20
  • 84.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
  • 5.34e3
  • 6.40e3
  • 6.54e3
  • 1.06e4
84.61
  • 84.61
  • 82.14
  • 78.56
  • 78.12
  • 64.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.67e3
  • 4.67e3
  • 4.67e3
  • 7.08e3
  • 7.08e3
84.37
  • 84.37
  • 84.37
  • 76.30
  • 76.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003894liver primordium
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
4.98e3
  • 4.98e3
  • 6.64e3
  • 6.64e3
83.33
  • 83.33
  • 77.77
  • 77.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 4.98e3
  • 5.23e3
83.33
  • 83.33
  • 83.33
  • 82.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
5.23e3
  • 5.23e3
  • 5.43e3
  • 5.85e3
  • 7.08e3
  • 7.12e3
  • 7.47e3
  • 7.97e3
82.49
  • 82.49
  • 81.81
  • 80.42
  • 76.30
  • 76.18
  • 74.99
  • 73.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
6.29e3
  • 6.29e3
78.94
  • 78.94
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.29e3
  • 6.29e3
  • 6.29e3
  • 6.72e3
  • 6.72e3
  • 7.12e3
  • 7.91e3
  • 7.91e3
78.94
  • 78.94
  • 78.94
  • 77.49
  • 77.49
  • 76.18
  • 73.52
  • 73.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
78.56
  • 78.56
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.40e3
  • 6.40e3
  • 6.64e3
  • 6.64e3
78.56
  • 78.56
  • 77.77
  • 77.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
6.72e3
  • 6.72e3
77.49
  • 77.49
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
6.89e3
  • 6.89e3
  • 8.54e3
  • 8.79e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
76.92
  • 76.92
  • 71.41
  • 70.57
  • 69.98
  • 69.43
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002531paired fin bud
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
7.86e3
  • 7.86e3
73.67
  • 73.67
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
8.30e3
  • 8.30e3
  • 8.30e3
  • 8.96e3
72.21
  • 72.21
  • 72.21
  • 69.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.44e3
  • 9.44e3
  • 9.44e3
  • 9.96e3
68.40
  • 68.40
  • 68.40
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
  • 1.34e4
  • 1.50e4
58.33
  • 58.33
  • 55.16
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011150pharyngeal arch derived gill
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species52 genesCompare expression

Orthology information comes from OMA : ENSDARG00000014329.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000014329.

Cross-references

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