D. rerio Gene: luc7l3 - ENSDARG00000014366 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014366
Nameluc7l3
DescriptionLUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:136380, zgc:158165
Orthologs(s)26 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.06e3
  • 1.06e3
96.45
  • 96.45
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.22e3
  • 1.22e3
  • 1.88e3
  • 4.57e3
  • 8.33e3
  • 8.60e3
95.92
  • 95.92
  • 93.72
  • 84.70
  • 72.12
  • 71.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
1.36e3
  • 1.36e3
  • 1.36e3
  • 1.68e3
  • 2.23e3
  • 2.64e3
  • 4.08e3
95.45
  • 95.45
  • 95.44
  • 94.38
  • 92.55
  • 91.16
  • 86.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.54e3
  • 1.54e3
94.86
  • 94.86
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.69e3
  • 1.69e3
  • 1.95e3
  • 2.50e3
  • 2.67e3
  • 2.70e3
  • 2.81e3
  • 3.15e3
  • 3.94e3
  • 6.29e3
  • 9.36e3
94.33
  • 94.33
  • 93.48
  • 91.62
  • 91.06
  • 90.95
  • 90.60
  • 89.47
  • 86.81
  • 78.95
  • 68.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.84e3
  • 1.84e3
93.83
  • 93.83
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
2.23e3
  • 2.23e3
  • 4.91e3
92.54
  • 92.54
  • 83.58
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
  • 6.75e3
  • 6.88e3
  • 7.01e3
92.07
  • 92.07
  • 77.41
  • 76.97
  • 76.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.38e3
  • 2.38e3
92.02
  • 92.02
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.46e3
  • 2.46e3
  • 3.82e3
91.77
  • 91.77
  • 87.20
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
91.63
  • 91.63
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
  • 3.99e3
91.63
  • 91.63
  • 86.65
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.72e3
  • 2.72e3
90.90
  • 90.90
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
  • 2.82e3
  • 3.27e3
  • 3.51e3
  • 3.79e3
  • 4.39e3
  • 4.73e3
  • 5.04e3
  • 5.57e3
  • 5.91e3
  • 6.32e3
  • 6.37e3
  • 6.84e3
  • 7.12e3
  • 1.38e4
  • 1.46e4
  • 1.50e4
90.71
  • 90.71
  • 90.55
  • 89.04
  • 88.24
  • 87.30
  • 85.31
  • 84.15
  • 83.13
  • 81.34
  • 80.23
  • 78.85
  • 78.67
  • 77.10
  • 76.16
  • 53.85
  • 51.01
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.80e3
  • 2.80e3
90.64
  • 90.64
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.10e3
  • 3.10e3
89.62
  • 89.62
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.32e3
  • 3.32e3
88.89
  • 88.89
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
3.37e3
  • 3.37e3
  • 5.66e3
  • 6.07e3
88.72
  • 88.72
  • 81.04
  • 79.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.51e3
  • 3.51e3
88.25
  • 88.25
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.56e3
  • 3.56e3
88.09
  • 88.09
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.08e3
  • 4.08e3
86.34
  • 86.34
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.47e3
  • 4.47e3
85.03
  • 85.03
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.52e3
  • 4.52e3
84.87
  • 84.87
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.59e3
  • 4.59e3
84.63
  • 84.63
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.39
  • 83.39
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.04e3
  • 5.04e3
  • 1.07e4
83.14
  • 83.14
  • 64.26
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.21e3
  • 5.21e3
82.55
  • 82.55
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.89e3
  • 5.89e3
80.29
  • 80.29
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.39e3
  • 6.39e3
78.60
  • 78.60
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.09e3
  • 7.09e3
76.27
  • 76.27
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.99e3
  • 7.99e3
73.24
  • 73.24
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.71e3
  • 8.71e3
70.83
  • 70.83
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
55.82
  • 55.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000014366.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Opisthokonta2 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000014366.

Cross-references

EnsemblENSDARG00000014366 (luc7l3)
ZFINZDB-GENE-060616-375 (luc7l3)
EMBLCU651584, CU651674
Uniprot/SPTREMBLF1Q9F6, F1Q9F6_DANRE, F1RDF4, F1RDF4_DANRE

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