D. rerio Gene: ddx4 - ENSDARG00000014373 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014373
Nameddx4
DescriptionDEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-990415-272]
OrganismDanio rerio (zebrafish)
Synonym(s)vas, vasa, vasa {eco:0000313|embl:aal89410.1,gn eco:0000313|ensembl:ensdarp00000125001}, vlg, wu:fi24g05, zgc:109812, zgc:158535
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • ZFS:0000041Larval:Days 21-29
202
  • 202
  • 1.49e4
99.33
  • 99.33
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
632
  • 632
97.89
  • 97.89
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000041Larval:Days 21-29
997
  • 997
  • 4.98e3
  • 1.49e4
96.67
  • 96.67
  • 83.34
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.04e3
  • 1.04e3
  • 1.17e3
  • 1.88e3
  • 3.98e3
  • 4.48e3
96.52
  • 96.52
  • 96.09
  • 93.71
  • 86.68
  • 84.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.39e3
  • 1.39e3
  • 1.78e3
  • 1.95e3
  • 2.91e3
  • 4.39e3
  • 7.24e3
95.36
  • 95.36
  • 94.05
  • 93.48
  • 90.26
  • 85.29
  • 75.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
95.31
  • 95.31
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.59e3
  • 1.59e3
94.69
  • 94.69
AEIR
  • AEIR
CL:0000670primordial germ cell
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000015Blastula:Dome
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000041Larval:Days 21-29
1.66e3
  • 1.66e3
  • 2.13e3
  • 2.99e3
  • 4.27e3
  • 4.98e3
  • 4.98e3
  • 5.97e3
  • 5.97e3
  • 5.97e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 9.33e3
  • 9.33e3
  • 1.12e4
  • 1.19e4
  • 1.19e4
  • 1.49e4
  • 1.49e4
94.45
  • 94.45
  • 92.86
  • 90.00
  • 85.71
  • 83.34
  • 83.33
  • 80.00
  • 80.00
  • 80.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 68.74
  • 68.74
  • 62.50
  • 60.00
  • 60.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072334 cell stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000014Blastula:Sphere
2.13e3
  • 2.13e3
  • 9.13e3
  • 9.96e3
92.86
  • 92.86
  • 69.43
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
91.73
  • 91.73
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.66e3
  • 2.66e3
91.10
  • 91.10
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.79
  • 89.79
AEIR
  • AEIR
CL:0000039germ line cell
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000041Larval:Days 21-29
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000029Pharyngula:Prim-5
3.73e3
  • 3.73e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
87.50
  • 87.50
  • 75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005564gonad primordium
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000037Larval:Day 5
3.73e3
  • 3.73e3
  • 1.49e4
87.50
  • 87.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.36e3
  • 4.36e3
85.40
  • 85.40
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.67e3
  • 4.67e3
84.38
  • 84.38
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.95e3
  • 4.95e3
83.43
  • 83.43
AEIR
  • AEIR
UBERON:0004749blastodisc
  • UBERON:00072334 cell stage
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
4.98e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
83.34
  • 83.34
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2005272immature gonad
  • ZFS:0000041Larval:Days 21-29
  • ZFS:0000040Larval:Days 14-20
4.98e3
  • 4.98e3
  • 5.97e3
83.34
  • 83.34
  • 80.00
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
5.29e3
  • 5.29e3
  • 5.88e3
  • 7.64e3
  • 8.97e3
  • 1.13e4
  • 1.37e4
  • 1.37e4
  • 1.45e4
  • 1.50e4
  • 1.53e4
  • 1.54e4
  • 1.57e4
  • 1.62e4
  • 1.63e4
  • 1.64e4
82.30
  • 82.30
  • 80.32
  • 74.41
  • 69.97
  • 62.21
  • 54.24
  • 54.18
  • 51.30
  • 49.80
  • 48.73
  • 48.43
  • 47.56
  • 45.81
  • 45.44
  • 45.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001263ovarian follicle stage I
  • ZFS:0000042Juvenile:Days 30-44
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
8.62e3
  • 8.62e3
71.13
  • 71.13
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.57e3
  • 9.57e3
67.96
  • 67.96
AEIR
  • AEIR
CL:0000020spermatogonium
  • ZFS:0000041Larval:Days 21-29
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000991gonad
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000043Juvenile:Days 45-89
  • ZFS:0000041Larval:Days 21-29
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0001570unfertilized egg (Danio)
  • UBERON:0000106zygote stage
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.62e4
  • 1.62e4
45.71
  • 45.71
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.80e4
  • 1.80e4
  • 1.83e4
  • 1.95e4
39.78
  • 39.78
  • 38.84
  • 34.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.81e4
  • 1.81e4
39.32
  • 39.32
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.96
  • 31.96
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.87
  • 31.87
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
29.94
  • 29.94
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.68
  • 25.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000014373 (ddx4)
ZFINZDB-GENE-990415-272 (ddx4)
EMBLAF461759, BX571726, CU855689
Uniprot/SPTREMBLE7EZA2, E7EZA2_DANRE, F1QES3, F1QES3_DANRE, F1QSP5, F1QSP5_DANRE, F1R6M3, F1R6M3_DANRE, F8W3U8, F8W3U8_DANRE, F8W4P0, F8W4P0_DANRE, Q8QGG8, Q8QGG8_DANRE

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