D. rerio Gene: smc1b - ENSDARG00000014402 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014402
Namesmc1b
Descriptionstructural maintenance of chromosomes 1B [Source:ZFIN;Acc:ZDB-GENE-091217-1]
OrganismDanio rerio (zebrafish)
Synonym(s)zmp:0000000547
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
303
  • 303
98.99
  • 98.99
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.99
  • 63.99
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.17
  • 58.17
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.42
  • 50.42
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.61
  • 34.61
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.95
  • 31.95
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.10
  • 31.10
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.40e4
  • 2.40e4
  • 2.43e4
19.53
  • 19.53
  • 18.62
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta2 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000014402.

Cross-references

EnsemblENSDARG00000014402 (smc1b)
ZFINZDB-GENE-091217-1 (smc1b)
EMBLCR376785
Uniprot/SPTREMBLX1WEJ1, X1WEJ1_DANRE

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