D. rerio Gene: usf1l - ENSDARG00000014463 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014463
Nameusf1l
Descriptionupstream transcription factor 1, like [Source:ZFIN;Acc:ZDB-GENE-040426-2269]
OrganismDanio rerio (zebrafish)
Synonym(s)usf2, wu:fb22c09, zgc:77845

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
95.50
  • 95.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
94.70
  • 94.70
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.63e3
  • 1.63e3
94.56
  • 94.56
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.70e3
  • 1.70e3
94.31
  • 94.31
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
1.79e3
  • 1.79e3
  • 4.08e3
  • 6.81e3
  • 6.95e3
  • 7.00e3
  • 7.65e3
94.00
  • 94.00
  • 86.35
  • 77.20
  • 76.73
  • 76.55
  • 74.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.95e3
  • 1.95e3
  • 2.21e3
  • 6.30e3
  • 9.44e3
  • 1.01e4
93.48
  • 93.48
  • 92.62
  • 78.89
  • 68.41
  • 66.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
92.76
  • 92.76
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.23e3
  • 2.23e3
92.54
  • 92.54
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.26e3
  • 2.26e3
92.42
  • 92.42
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
91.71
  • 91.71
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.48e3
  • 2.48e3
91.70
  • 91.70
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.52e3
  • 2.52e3
91.57
  • 91.57
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
2.66e3
  • 2.66e3
  • 3.27e3
  • 1.21e4
91.10
  • 91.10
  • 89.07
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.73e3
  • 2.73e3
90.85
  • 90.85
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
2.78e3
  • 2.78e3
  • 2.96e3
  • 3.76e3
  • 3.82e3
  • 4.53e3
  • 6.58e3
  • 7.21e3
  • 7.54e3
  • 7.87e3
  • 1.11e4
90.69
  • 90.69
  • 90.09
  • 87.41
  • 87.23
  • 84.84
  • 77.96
  • 75.86
  • 74.76
  • 73.64
  • 62.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
90.02
  • 90.02
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.02e3
  • 3.02e3
89.90
  • 89.90
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.15e3
  • 3.15e3
  • 4.10e3
89.45
  • 89.45
  • 86.29
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.27e3
  • 3.27e3
89.06
  • 89.06
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.62e3
  • 3.62e3
87.89
  • 87.89
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.18e3
  • 4.18e3
86.00
  • 86.00
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.21e3
  • 4.21e3
85.90
  • 85.90
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
5.77e3
  • 5.77e3
  • 8.65e3
  • 1.49e4
80.69
  • 80.69
  • 71.05
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.77e3
  • 5.77e3
  • 7.76e3
  • 1.03e4
80.67
  • 80.67
  • 74.01
  • 65.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.22e3
  • 6.22e3
  • 7.44e3
  • 7.74e3
  • 8.37e3
79.17
  • 79.17
  • 75.09
  • 74.07
  • 71.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.76e3
  • 6.76e3
77.36
  • 77.36
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.72e3
  • 7.72e3
74.14
  • 74.14
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.88e3
  • 7.88e3
73.63
  • 73.63
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.95e3
  • 8.95e3
  • 9.71e3
70.05
  • 70.05
  • 67.47
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.60e3
  • 9.60e3
67.87
  • 67.87
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
9.66e3
  • 9.66e3
  • 9.84e3
  • 1.00e4
  • 1.01e4
  • 1.02e4
  • 1.02e4
  • 1.06e4
  • 1.14e4
  • 1.16e4
  • 1.16e4
  • 1.18e4
  • 1.18e4
  • 1.19e4
  • 1.20e4
  • 1.29e4
  • 1.41e4
  • 1.50e4
67.66
  • 67.66
  • 67.05
  • 66.43
  • 66.24
  • 65.98
  • 65.90
  • 64.38
  • 61.78
  • 61.04
  • 61.03
  • 60.57
  • 60.52
  • 60.08
  • 59.94
  • 56.68
  • 52.87
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EnsemblENSDARG00000014463 (usf1l)
ZFINZDB-GENE-040426-2269 (usf1l)
EMBLBC065876, BX276128, BX942832
Uniprot/SPTREMBLF6NL66, F6NL66_DANRE, F6PD48, F6PD48_DANRE, Q6P015, Q6P015_DANRE, R4GE73, R4GE73_DANRE

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