D. rerio Gene: yipf1 - ENSDARG00000014474 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014474
Nameyipf1
DescriptionYip1 domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-040822-35]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:91977
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.78e3
  • 1.78e3
  • 6.01e3
  • 7.40e3
  • 7.47e3
  • 1.28e4
94.03
  • 94.03
  • 79.88
  • 75.22
  • 74.98
  • 57.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.84e3
  • 2.84e3
90.51
  • 90.51
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.84e3
  • 2.84e3
  • 1.39e4
90.50
  • 90.50
  • 53.57
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.79e3
  • 3.79e3
87.31
  • 87.31
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.96e3
  • 3.96e3
86.74
  • 86.74
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.38e3
  • 4.38e3
85.35
  • 85.35
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.53e3
  • 4.53e3
84.82
  • 84.82
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.00e3
  • 5.00e3
83.27
  • 83.27
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.63e3
  • 5.63e3
81.16
  • 81.16
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
80.17
  • 80.17
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.34e3
  • 6.34e3
78.79
  • 78.79
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.70e3
  • 6.70e3
77.56
  • 77.56
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.80e3
  • 6.80e3
77.22
  • 77.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.10e3
  • 7.10e3
76.22
  • 76.22
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.28e3
  • 7.28e3
  • 7.45e3
75.61
  • 75.61
  • 75.06
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.43e3
  • 7.43e3
  • 1.50e4
75.13
  • 75.13
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
74.98
  • 74.98
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.58e3
  • 7.58e3
74.61
  • 74.61
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
7.69e3
  • 7.69e3
  • 8.04e3
  • 8.80e3
  • 1.04e4
  • 1.12e4
  • 1.53e4
  • 1.60e4
  • 1.75e4
  • 1.78e4
  • 1.78e4
74.27
  • 74.27
  • 73.09
  • 70.54
  • 65.29
  • 62.59
  • 48.61
  • 46.54
  • 41.29
  • 40.40
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.87e3
  • 7.87e3
73.66
  • 73.66
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
8.20e3
  • 8.20e3
  • 1.11e4
  • 1.37e4
  • 1.38e4
  • 1.38e4
  • 1.41e4
72.53
  • 72.53
  • 62.78
  • 54.15
  • 53.75
  • 53.66
  • 52.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.99e3
  • 8.99e3
  • 1.25e4
69.90
  • 69.90
  • 58.21
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
9.25e3
  • 9.25e3
  • 1.41e4
  • 1.49e4
  • 1.66e4
  • 1.70e4
  • 1.71e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.83e4
  • 1.83e4
  • 1.83e4
  • 1.84e4
69.02
  • 69.02
  • 52.63
  • 50.25
  • 44.38
  • 43.21
  • 42.73
  • 40.62
  • 40.56
  • 40.55
  • 40.43
  • 40.38
  • 40.18
  • 38.72
  • 38.62
  • 38.57
  • 38.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.33e3
  • 9.33e3
68.76
  • 68.76
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.20e4
  • 1.20e4
  • 1.79e4
59.71
  • 59.71
  • 40.06
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.24e4
  • 1.24e4
58.57
  • 58.57
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
  • 1.29e4
57.60
  • 57.60
  • 56.80
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.27e4
  • 1.27e4
  • 1.34e4
  • 1.53e4
  • 1.62e4
57.34
  • 57.34
  • 55.16
  • 48.83
  • 45.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.30e4
  • 1.30e4
56.32
  • 56.32
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
  • 1.34e4
  • 1.70e4
55.84
  • 55.84
  • 55.00
  • 42.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.36e4
  • 1.36e4
54.39
  • 54.39
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.42e4
  • 1.42e4
52.40
  • 52.40
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000014474.

Cross-references

EnsemblENSDARG00000014474 (yipf1)
ZFINZDB-GENE-040822-35 (yipf1)
EMBLBC080262, BX248497
Uniprot/SPTREMBLB0S5I9, B0S5I9_DANRE, B0S5J0, B0S5J0_DANRE, Q68EH1, Q68EH1_DANRE

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