D. rerio Gene: ptf1a - ENSDARG00000014479 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014479
Nameptf1a
Descriptionpancreas specific transcription factor, 1a [Source:ZFIN;Acc:ZDB-GENE-030616-579]
OrganismDanio rerio (zebrafish)
Synonym(s)ptf1, ptfa, si:zc142h2.2, zgc:112216
Orthologs(s)12 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.81e3
  • 1.81e3
93.94
  • 93.94
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
2.13e3
  • 2.13e3
  • 4.98e3
  • 6.64e3
  • 6.97e3
  • 7.47e3
  • 7.97e3
  • 7.97e3
  • 8.15e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
92.86
  • 92.86
  • 83.33
  • 77.77
  • 76.66
  • 74.99
  • 73.32
  • 73.32
  • 72.72
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
3.32e3
  • 3.32e3
  • 5.43e3
  • 5.60e3
  • 6.22e3
88.89
  • 88.89
  • 81.81
  • 81.25
  • 79.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000017exocrine pancreas
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000037Larval:Day 5
3.73e3
  • 3.73e3
  • 8.96e3
  • 9.96e3
  • 1.12e4
87.50
  • 87.50
  • 70.00
  • 66.67
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003924ventral pancreatic bud
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
  • 4.98e3
83.34
  • 83.34
  • 83.34
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
4.98e3
  • 4.98e3
  • 4.98e3
  • 8.53e3
83.33
  • 83.33
  • 83.33
  • 71.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
4.98e3
  • 4.98e3
  • 6.97e3
  • 6.97e3
  • 7.47e3
  • 7.97e3
  • 8.54e3
  • 9.13e3
  • 9.13e3
  • 1.49e4
83.33
  • 83.33
  • 76.66
  • 76.66
  • 74.99
  • 73.32
  • 71.42
  • 69.43
  • 69.43
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
6.72e3
  • 6.72e3
  • 7.80e3
  • 9.33e3
  • 9.51e3
  • 1.01e4
  • 1.39e4
77.49
  • 77.49
  • 73.90
  • 68.75
  • 68.14
  • 66.05
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001789outer nuclear layer of retina
  • ZFS:0000034Hatching:Pec-fin
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
ZFA:0001086muscle pioneer (Danio)
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
7.47e3
  • 7.47e3
  • 8.30e3
  • 8.53e3
75.00
  • 75.00
  • 72.22
  • 71.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000034Hatching:Pec-fin
8.53e3
  • 8.53e3
  • 9.96e3
  • 1.49e4
71.43
  • 71.43
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
9.14e3
  • 9.14e3
69.41
  • 69.41
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
9.51e3
  • 9.51e3
  • 1.11e4
  • 1.23e4
  • 1.30e4
  • 1.41e4
  • 1.43e4
  • 1.53e4
68.16
  • 68.16
  • 62.83
  • 58.93
  • 56.31
  • 52.75
  • 52.03
  • 48.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
66.67
  • 66.67
  • 49.99
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005499rhombomere 1
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000034Hatching:Pec-fin
1.12e4
  • 1.12e4
  • 1.22e4
  • 1.49e4
62.49
  • 62.49
  • 59.08
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.22e4
  • 1.22e4
  • 1.23e4
  • 1.65e4
59.15
  • 59.15
  • 58.73
  • 44.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
1.36e4
  • 1.36e4
  • 1.49e4
  • 1.49e4
54.53
  • 54.53
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000152exocrine cell
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000561amacrine cell
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000745retina horizontal cell
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001790outer plexiform layer of retina
  • ZFS:0000034Hatching:Pec-fin
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.52
  • 48.52
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.45
  • 41.45
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.03
  • 33.03
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.41
  • 32.41
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000014479 (ptf1a)
ZFINZDB-GENE-030616-579 (ptf1a)
EMBLAL845362, AY245546, BC093269
Uniprot/SWISSPROTPTF1A_DANRE, Q7ZSX3

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