D. rerio Gene: cdh6 - ENSDARG00000014522 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014522
Namecdh6
Descriptioncadherin 6 [Source:ZFIN;Acc:ZDB-GENE-050320-92]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:103673
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.51e3
  • 1.51e3
  • 3.88e3
94.95
  • 94.95
  • 87.00
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
2.11e3
  • 2.11e3
  • 1.30e4
92.94
  • 92.94
  • 56.49
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
3.01e3
  • 3.01e3
  • 3.07e3
  • 3.21e3
  • 3.48e3
  • 5.73e3
89.93
  • 89.93
  • 89.73
  • 89.25
  • 88.34
  • 80.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.02e3
  • 4.02e3
  • 6.21e3
86.53
  • 86.53
  • 79.22
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.55e3
  • 4.55e3
  • 1.17e4
84.78
  • 84.78
  • 60.88
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.11e3
  • 6.11e3
79.54
  • 79.54
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.28e3
  • 6.28e3
78.96
  • 78.96
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
7.06e3
  • 7.06e3
76.36
  • 76.36
AEIR
  • AEIR
UBERON:0002827vestibulocochlear ganglion
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 9.96e3
  • 1.19e4
75.00
  • 75.00
  • 66.67
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.11e3
  • 8.11e3
72.86
  • 72.86
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.01e3
  • 9.01e3
69.83
  • 69.83
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.60e3
  • 9.60e3
  • 1.50e4
67.84
  • 67.84
  • 49.68
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.78e3
  • 9.78e3
67.24
  • 67.24
AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0015238pineal complex
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:2001156posterior lateral line placode
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
1.03e4
  • 1.03e4
65.37
  • 65.37
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000030Pharyngula:Prim-15
1.05e4
  • 1.05e4
64.99
  • 64.99
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.10e4
  • 1.10e4
  • 1.28e4
63.32
  • 63.32
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.10e4
  • 1.10e4
  • 1.25e4
63.32
  • 63.32
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.34
  • 62.34
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.15e4
  • 1.15e4
  • 1.17e4
61.34
  • 61.34
  • 60.68
AEIR
  • AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000024Segmentation:5-9 somites
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
  • 1.34e4
57.13
  • 57.13
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.30e4
  • 1.30e4
  • 1.31e4
  • 1.33e4
56.49
  • 56.49
  • 56.22
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.31e4
  • 1.31e4
  • 1.34e4
  • 1.41e4
  • 1.49e4
56.23
  • 56.23
  • 54.97
  • 52.75
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.26
  • 55.26
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
1.35e4
  • 1.35e4
  • 1.39e4
  • 1.40e4
54.73
  • 54.73
  • 53.55
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
  • 1.49e4
54.53
  • 54.53
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:2000120lateral line ganglion
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
1.37e4
  • 1.37e4
  • 1.49e4
54.15
  • 54.15
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.96
  • 53.96
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.44e4
  • 1.44e4
51.62
  • 51.62
AEIR
  • AEIR
UBERON:0000044dorsal root ganglion
  • ZFS:0000032Pharyngula:High-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001007digestive system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001700geniculate ganglion
  • ZFS:0000032Pharyngula:High-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001785cranial nerve
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001297vagal placode 1
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001298vagal placode 2
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001299vagal placode 3
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001300vagal placode 4
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001313ventral anterior lateral line ganglion
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001316anterior lateral line placode
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001483middle lateral line ganglion
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001305vagal ganglion 4
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005256trunk mesenchyme
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001302vagal ganglion 1
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001303vagal ganglion 2
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001304vagal ganglion 3
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001314posterior lateral line ganglion
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.51e4
  • 1.51e4
49.32
  • 49.32
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.70
  • 38.70
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.02
  • 35.02
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata9 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000014522.

Cross-references

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