D. rerio Gene: cdh6 - ENSDARG00000014522 - Danio rerio (zebrafish)

Gene Information

Ensembl IDENSDARG00000014522
Namecdh6
Descriptioncadherin 6 [Source:ZFIN;Acc:ZDB-GENE-050320-92]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
2.93e3
  • 2.93e3
  • 3.01e3
  • 3.07e3
  • 3.48e3
  • 5.73e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.55e3
  • 4.55e3
  • 1.17e4
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.28e3
  • 6.28e3
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
7.19e3
  • 7.19e3
AEIR
  • AEIR
UBERON:0002827vestibulocochlear ganglion
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
7.40e3
  • 7.40e3
  • 9.86e3
  • 1.18e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.43e3
  • 8.43e3
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.78e3
  • 9.78e3
AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
9.86e3
  • 9.86e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0015238pineal complex
  • ZFS:0000030Pharyngula:Prim-15
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:2001156posterior lateral line placode
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
9.86e3
  • 9.86e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
1.02e4
  • 1.02e4
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000030Pharyngula:Prim-15
1.04e4
  • 1.04e4
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.09e4
  • 1.09e4
  • 1.27e4
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.09e4
  • 1.09e4
  • 1.23e4
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.14e4
  • 1.14e4
  • 1.16e4
AEIR
  • AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000024Segmentation:5-9 somites
1.18e4
  • 1.18e4
AEIR
  • AEIR
UBERON:0002120pronephros
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.27e4
  • 1.27e4
  • 1.33e4
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000030Pharyngula:Prim-15
1.29e4
  • 1.29e4
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.29e4
  • 1.29e4
  • 1.30e4
  • 1.32e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.30e4
  • 1.30e4
  • 1.33e4
  • 1.40e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
1.34e4
  • 1.34e4
  • 1.37e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.35e4
  • 1.35e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:2000120lateral line ganglion
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
1.36e4
  • 1.36e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.43e4
  • 1.43e4
AEIR
  • AEIR
UBERON:0000044dorsal root ganglion
  • ZFS:0000032Pharyngula:High-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001007digestive system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0001700geniculate ganglion
  • ZFS:0000032Pharyngula:High-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0001785cranial nerve
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001297vagal placode 1
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001298vagal placode 2
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001299vagal placode 3
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001300vagal placode 4
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001313ventral anterior lateral line ganglion
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001316anterior lateral line placode
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001483middle lateral line ganglion
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001305vagal ganglion 4
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0005256trunk mesenchyme
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001302vagal ganglion 1
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001303vagal ganglion 2
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001304vagal ganglion 3
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001314posterior lateral line ganglion
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000024Segmentation:5-9 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO