D. rerio Gene: atg4a - ENSDARG00000014531 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014531
Nameatg4a
Descriptionautophagy related 4A, cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-050522-430]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:111958
Orthologs(s)26 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
2.55e3
  • 2.55e3
  • 4.41e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 6.97e3
  • 7.03e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
91.46
  • 91.46
  • 85.22
  • 83.33
  • 78.12
  • 77.77
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.66
  • 76.46
  • 76.46
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.42e3
  • 5.42e3
  • 9.87e3
81.87
  • 81.87
  • 66.94
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
6.16e3
  • 6.16e3
  • 8.19e3
79.39
  • 79.39
  • 72.57
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.88e3
  • 7.88e3
73.63
  • 73.63
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.15e3
  • 8.15e3
72.71
  • 72.71
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
9.69e3
  • 9.69e3
67.55
  • 67.55
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.86e3
  • 9.86e3
  • 1.02e4
66.97
  • 66.97
  • 66.01
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.02e4
  • 1.02e4
  • 1.11e4
  • 1.18e4
  • 1.21e4
  • 1.34e4
65.84
  • 65.84
  • 62.86
  • 60.51
  • 59.43
  • 55.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.65
  • 65.65
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.11
  • 65.11
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.92
  • 64.92
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.69
  • 64.69
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.90
  • 63.90
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.72
  • 63.72
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.11e4
  • 1.11e4
62.79
  • 62.79
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.61
  • 61.61
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.79
  • 58.79
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.34
  • 58.34
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.04
  • 58.04
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
  • 1.59e4
56.98
  • 56.98
  • 46.71
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.29
  • 56.29
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.37e4
  • 1.37e4
  • 1.45e4
54.17
  • 54.17
  • 51.47
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.09
  • 52.09
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.06
  • 52.06
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.99
  • 39.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species19 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000014531.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000014531.

Cross-references

EnsemblENSDARG00000014531 (atg4a)
ZFINZDB-GENE-050522-430 (atg4a)
EMBLBC095617, CU571325, FP102106
Uniprot/SPTREMBLQ4VBK1, Q4VBK1_DANRE

Do not show this banner again