D. rerio Gene: rfx3 - ENSDARG00000014550 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014550
Namerfx3
Descriptionregulatory factor X, 3 (influences HLA class II expression) [Source:ZFIN;Acc:ZDB-GENE-061103-253]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:153245
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
872
  • 872
  • 1.50e4
97.08
  • 97.08
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.32e3
  • 5.32e3
82.20
  • 82.20
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
5.82e3
  • 5.82e3
  • 8.76e3
  • 1.02e4
  • 1.07e4
  • 1.26e4
80.52
  • 80.52
  • 70.68
  • 65.96
  • 64.21
  • 57.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.72e3
  • 6.72e3
77.51
  • 77.51
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
8.59e3
  • 8.59e3
  • 1.01e4
71.24
  • 71.24
  • 66.23
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
9.01e3
  • 9.01e3
  • 1.15e4
69.84
  • 69.84
  • 61.65
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
9.51e3
  • 9.51e3
68.15
  • 68.15
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.58e3
  • 9.58e3
67.93
  • 67.93
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.65
  • 63.65
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.11e4
  • 1.11e4
  • 1.49e4
62.84
  • 62.84
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.14e4
  • 1.14e4
61.79
  • 61.79
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.23e4
  • 1.23e4
  • 1.57e4
58.75
  • 58.75
  • 47.28
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.30
  • 57.30
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
  • 1.63e4
54.56
  • 54.56
  • 45.55
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.07
  • 54.07
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.47
  • 53.47
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
  • 1.68e4
53.44
  • 53.44
  • 43.75
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.69
  • 52.69
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.67
  • 49.67
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.19
  • 48.19
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.18
  • 45.18
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.22
  • 44.22
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.41
  • 43.41
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.53
  • 32.53
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.43
  • 27.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Metazoa1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000014550.

Cross-references

EnsemblENSDARG00000014550 (rfx3)
ZFINZDB-GENE-061103-253 (rfx3)
EMBLCU468737, CU570793
Uniprot/SPTREMBLE9QFX9, E9QFX9_DANRE, E9QIC2, E9QIC2_DANRE, F1QI01, F1QI01_DANRE

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