D. rerio Gene: colgalt2 - ENSDARG00000014670 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014670
Namecolgalt2
Descriptioncollagen beta(1-O)galactosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-070222-1]
OrganismDanio rerio (zebrafish)
Synonym(s)glt25d2, loc100003546x
Orthologs(s)20 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
8.83e3
  • 8.83e3
  • 9.48e3
  • 1.09e4
  • 1.13e4
  • 1.50e4
70.43
  • 70.43
  • 68.26
  • 63.39
  • 62.00
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
  • 1.14e4
64.12
  • 64.12
  • 61.87
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.28
  • 53.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.26
  • 50.26
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.56e4
  • 1.56e4
  • 1.70e4
47.91
  • 47.91
  • 43.21
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.61e4
  • 1.61e4
46.00
  • 46.00
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.00
  • 42.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.75e4
  • 1.75e4
41.52
  • 41.52
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.72
  • 38.72
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.85e4
  • 1.85e4
37.95
  • 37.95
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.87e4
  • 1.87e4
  • 2.02e4
37.50
  • 37.50
  • 32.42
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.09
  • 35.09
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.11
  • 34.11
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.98e4
  • 1.98e4
33.70
  • 33.70
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.66
  • 33.66
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.26e4
  • 2.26e4
24.48
  • 24.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSDARG00000014670.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata3 genesCompare expression
Bilateria4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000014670.

Cross-references

EnsemblENSDARG00000014670 (colgalt2)
ZFINZDB-GENE-070222-1 (colgalt2)
EMBLCR382344, CU984571
Uniprot/SPTREMBLA9C3Q0, A9C3Q0_DANRE

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