D. rerio Gene: pgm2l1 - ENSDARG00000014704 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014704
Namepgm2l1
Descriptionphosphoglucomutase 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-041008-205]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7140576, zgc:198285
Orthologs(s)29 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
713
  • 713
97.62
  • 97.62
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.98e3
  • 5.98e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.02e3
  • 6.02e3
79.83
  • 79.83
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
6.81e3
  • 6.81e3
  • 8.03e3
  • 9.87e3
  • 1.03e4
  • 1.24e4
77.21
  • 77.21
  • 73.13
  • 66.97
  • 65.64
  • 58.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.83
  • 75.83
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
7.30e3
  • 7.30e3
  • 1.50e4
  • 1.50e4
  • 1.50e4
  • 1.51e4
  • 1.51e4
  • 1.64e4
  • 1.75e4
  • 1.76e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
75.55
  • 75.55
  • 49.92
  • 49.81
  • 49.80
  • 49.50
  • 49.46
  • 45.17
  • 41.48
  • 41.04
  • 40.55
  • 40.43
  • 40.38
  • 40.38
  • 40.18
  • 39.85
  • 39.42
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.67e3
  • 7.67e3
74.33
  • 74.33
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.92e3
  • 7.92e3
73.48
  • 73.48
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.15e3
  • 8.15e3
72.71
  • 72.71
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.01e3
  • 9.01e3
69.83
  • 69.83
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.09e3
  • 9.09e3
69.58
  • 69.58
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000031Pharyngula:Prim-25
9.15e3
  • 9.15e3
  • 1.49e4
  • 1.78e4
69.36
  • 69.36
  • 49.94
  • 40.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.20e3
  • 9.20e3
69.21
  • 69.21
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.23e3
  • 9.23e3
69.10
  • 69.10
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.26e3
  • 9.26e3
68.98
  • 68.98
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.74e3
  • 9.74e3
67.40
  • 67.40
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
67.35
  • 67.35
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.61
  • 64.61
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.07e4
  • 1.07e4
64.21
  • 64.21
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.07e4
  • 1.07e4
  • 1.27e4
64.07
  • 64.07
  • 57.38
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.09e4
  • 1.09e4
  • 1.33e4
63.42
  • 63.42
  • 55.38
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.92
  • 62.92
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
1.14e4
  • 1.14e4
  • 1.16e4
  • 1.20e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
  • 1.27e4
  • 1.29e4
  • 1.39e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
61.88
  • 61.88
  • 61.10
  • 59.98
  • 58.80
  • 58.31
  • 58.31
  • 58.31
  • 57.47
  • 56.65
  • 53.31
  • 49.99
  • 49.99
  • 49.99
  • 49.99
  • 49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.19e4
  • 1.19e4
  • 1.48e4
  • 1.77e4
60.26
  • 60.26
  • 50.37
  • 40.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.37e4
  • 1.37e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
  • 1.64e4
54.29
  • 54.29
  • 53.56
  • 53.56
  • 53.50
  • 45.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.42e4
  • 1.42e4
  • 1.56e4
52.62
  • 52.62
  • 47.93
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.43e4
  • 1.43e4
52.09
  • 52.09
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
1.45e4
  • 1.45e4
  • 1.47e4
  • 1.54e4
  • 1.60e4
  • 1.61e4
  • 1.63e4
  • 1.74e4
  • 1.75e4
51.37
  • 51.37
  • 50.92
  • 48.43
  • 46.56
  • 46.17
  • 45.54
  • 41.62
  • 41.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.60e4
  • 1.60e4
  • 1.66e4
  • 1.74e4
46.31
  • 46.31
  • 44.30
  • 41.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.61e4
  • 1.61e4
46.11
  • 46.11
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species29 genesCompare expression

Orthology information comes from OMA : ENSDARG00000014704.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000014704.

Cross-references

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