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D. rerio Gene: her1 - ENSDARG00000014722 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014722
Nameher1
Descriptionhairy-related 1 [Source:ZFIN;Acc:ZDB-GENE-980526-125]
OrganismDanio rerio (zebrafish)
Synonym(s)etid309753.5, her-1, hes7, id:ibd5086

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003059presomitic mesoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
679
  • 679
  • 712
  • 830
  • 3.73e3
  • 3.73e3
  • 4.40e3
  • 8.53e3
  • 8.96e3
97.73
  • 97.73
  • 97.62
  • 97.22
  • 87.50
  • 87.50
  • 85.28
  • 71.43
  • 70.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.97e3
  • 1.97e3
93.40
  • 93.40
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
2.17e3
  • 2.17e3
  • 3.57e3
  • 5.96e3
  • 6.01e3
  • 6.94e3
  • 1.03e4
92.73
  • 92.73
  • 88.06
  • 80.04
  • 79.87
  • 76.76
  • 65.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
3.32e3
  • 3.32e3
  • 4.48e3
  • 6.15e3
  • 6.97e3
  • 7.12e3
  • 8.96e3
88.89
  • 88.89
  • 84.99
  • 79.40
  • 76.66
  • 76.18
  • 69.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007285presumptive paraxial mesoderm
  • ZFS:0000021Gastrula:90%-epiboly
4.98e3
  • 4.98e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 9.79e3
  • 1.05e4
  • 1.15e4
  • 1.17e4
  • 1.20e4
  • 1.25e4
83.32
  • 83.32
  • 67.21
  • 64.98
  • 61.34
  • 60.66
  • 59.98
  • 58.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
5.66e3
  • 5.66e3
  • 1.05e4
  • 1.24e4
  • 1.24e4
  • 1.24e4
  • 1.24e4
  • 1.24e4
  • 1.24e4
  • 1.34e4
  • 1.49e4
81.06
  • 81.06
  • 64.99
  • 58.33
  • 58.33
  • 58.33
  • 58.33
  • 58.33
  • 58.33
  • 54.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002541germ ring
  • ZFS:0000019Gastrula:Shield
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.16e4
  • 1.16e4
  • 1.25e4
  • 1.28e4
  • 1.34e4
  • 1.36e4
  • 1.38e4
61.09
  • 61.09
  • 58.31
  • 57.14
  • 55.24
  • 54.53
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000089hypoblast (generic)
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
1.19e4
  • 1.19e4
  • 1.49e4
60.00
  • 60.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0007282presumptive segmental plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
1.19e4
  • 1.19e4
  • 1.33e4
59.99
  • 59.99
  • 55.55
AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.26e4
  • 1.26e4
  • 1.26e4
  • 1.39e4
57.87
  • 57.87
  • 57.87
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.26e4
  • 1.26e4
  • 1.58e4
57.66
  • 57.66
  • 47.07
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.87
  • 54.87
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.39e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
53.55
  • 53.55
  • 53.31
  • 53.31
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006603presumptive mesoderm
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0001065lateral mesoderm (Danio)
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.55e4
  • 1.55e4
47.99
  • 47.99
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.13
  • 43.13
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.22
  • 40.22
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.13
  • 34.13
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.93
  • 31.93
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000014722 (her1)
ZFINZDB-GENE-980526-125 (her1)
EMBLBC162281, BX537304
Uniprot/SPTREMBLA3KQ56, A3KQ56_DANRE

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