D. rerio Gene: syngr3a - ENSDARG00000014871 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014871
Namesyngr3a
Descriptionsynaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
OrganismDanio rerio (zebrafish)
Synonym(s)syngr3, syngr3 {eco:0000313|embl:aah95245.1,gn eco:0000313|zfin:zdb-gene-050522-541}, zgc:110406
Orthologs(s)14 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.46e3
  • 1.46e3
  • 1.49e4
95.11
  • 95.11
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
2.16e3
  • 2.16e3
  • 4.10e3
  • 1.33e4
  • 1.45e4
  • 1.53e4
92.76
  • 92.76
  • 86.27
  • 55.45
  • 51.39
  • 48.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.27e3
  • 2.27e3
  • 1.50e4
92.39
  • 92.39
  • 49.93
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.60e3
  • 2.60e3
  • 5.59e3
91.31
  • 91.31
  • 81.28
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.78e3
  • 3.78e3
  • 1.06e4
87.34
  • 87.34
  • 64.60
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.31
  • 63.31
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.06
  • 62.06
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
55.94
  • 55.94
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.57e4
  • 1.57e4
  • 1.65e4
47.56
  • 47.56
  • 44.84
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.12
  • 44.12
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.26
  • 42.26
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.87e4
  • 1.87e4
  • 1.87e4
37.53
  • 37.53
  • 37.32
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.34
  • 29.34
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000014871.

Cross-references

EnsemblENSDARG00000014871 (syngr3a)
ZFINZDB-GENE-050522-541 (syngr3a)
EMBLBC095245, BC165918, BX649547
Uniprot/SPTREMBLQ503N6, Q503N6_DANRE

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