D. rerio Gene: lims2 - ENSDARG00000014976 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000014976
Namelims2
DescriptionLIM and senescent cell antigen-like domains 2 [Source:ZFIN;Acc:ZDB-GENE-050522-56]
OrganismDanio rerio (zebrafish)
Synonym(s)ch1073-55a19.1, hm:zeh0381, pinch2, zeh0381, zgc:112257
Orthologs(s)7 orthologs
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
505
  • 505
98.31
  • 98.31
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
689
  • 689
97.70
  • 97.70
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.53e3
  • 1.53e3
  • 4.88e3
  • 1.15e4
94.87
  • 94.87
  • 83.66
  • 61.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.76e3
  • 1.76e3
94.10
  • 94.10
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.45
  • 91.45
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
3.39e3
  • 3.39e3
  • 3.89e3
  • 4.01e3
  • 5.03e3
  • 5.22e3
  • 6.35e3
  • 7.83e3
  • 1.36e4
  • 1.40e4
  • 1.43e4
88.66
  • 88.66
  • 86.97
  • 86.59
  • 83.15
  • 82.51
  • 78.75
  • 73.79
  • 54.36
  • 53.14
  • 52.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
4.81e3
  • 4.81e3
  • 6.32e3
  • 7.27e3
  • 7.87e3
  • 9.26e3
  • 9.36e3
  • 1.03e4
  • 1.39e4
  • 1.42e4
  • 1.44e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
83.90
  • 83.90
  • 78.85
  • 75.65
  • 73.67
  • 69.01
  • 68.66
  • 65.36
  • 53.39
  • 52.29
  • 51.87
  • 50.93
  • 50.25
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.46e3
  • 5.46e3
81.71
  • 81.71
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
6.56e3
  • 6.56e3
  • 1.29e4
78.04
  • 78.04
  • 56.86
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.96e3
  • 6.96e3
  • 7.58e3
  • 8.81e3
76.70
  • 76.70
  • 74.64
  • 70.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.01e3
  • 8.01e3
  • 1.15e4
73.18
  • 73.18
  • 61.60
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.61e3
  • 8.61e3
71.17
  • 71.17
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.02e3
  • 9.02e3
69.79
  • 69.79
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.24e3
  • 9.24e3
69.07
  • 69.07
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
9.45e3
  • 9.45e3
  • 1.50e4
68.36
  • 68.36
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.03e4
  • 1.03e4
65.47
  • 65.47
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.08e4
  • 1.08e4
  • 1.12e4
  • 1.14e4
  • 1.16e4
63.87
  • 63.87
  • 62.48
  • 61.75
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.15e4
  • 1.15e4
61.57
  • 61.57
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.16e4
  • 1.16e4
  • 1.31e4
  • 1.46e4
61.31
  • 61.31
  • 56.11
  • 51.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
1.16e4
  • 1.16e4
  • 1.18e4
  • 1.20e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
61.09
  • 61.09
  • 60.50
  • 59.98
  • 59.98
  • 58.31
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.18e4
60.50
  • 60.50
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.21e4
  • 1.21e4
  • 1.21e4
  • 1.35e4
  • 1.49e4
59.65
  • 59.65
  • 59.62
  • 54.90
  • 50.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
59.37
  • 59.37
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.03
  • 59.03
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
  • 1.37e4
58.79
  • 58.79
  • 54.02
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.12
  • 58.12
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
55.98
  • 55.98
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.32e4
  • 1.32e4
55.69
  • 55.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.80
  • 47.80
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.54
  • 39.54
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.47
  • 38.47
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.28
  • 31.28
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species7 genesCompare expression

Orthology information comes from OMA : ENSDARG00000014976.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression
Opisthokonta6 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000014976.

Cross-references

EnsemblENSDARG00000014976 (lims2)
ZFINZDB-GENE-050522-56 (lims2)
EMBLCABZ01079122, CU638712
Uniprot/SPTREMBLF1QKL9, F1QKL9_DANRE, F1R9E2, F1R9E2_DANRE

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