D. rerio Gene: ddx39ab - ENSDARG00000015111 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015111
Nameddx39ab
DescriptionDEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
OrganismDanio rerio (zebrafish)
Synonym(s)ddx39, ddx39b, ddx39b {eco:0000313|embl:aah44169.1,gn eco:0000313|zfin:zdb-gene-040426-2902}, fc16a02, wu:fc16a02, zgc:55433, zgc:85646
Orthologs(s)9 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
35.0
  • 35.0
99.89
  • 99.89
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
64.6
  • 64.6
99.79
  • 99.79
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
71.0
  • 71.0
  • 91.5
  • 152
  • 377
  • 598
99.77
  • 99.77
  • 99.70
  • 99.49
  • 98.74
  • 98.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
76.5
  • 76.5
  • 144
  • 183
  • 217
  • 224
  • 310
99.75
  • 99.75
  • 99.52
  • 99.39
  • 99.28
  • 99.25
  • 98.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
211
  • 211
  • 233
  • 235
  • 237
  • 277
  • 384
  • 501
  • 757
  • 765
  • 1.04e3
  • 1.73e3
  • 1.83e3
  • 1.88e3
  • 2.64e3
  • 1.15e4
  • 1.21e4
  • 1.37e4
  • 1.47e4
99.30
  • 99.30
  • 99.22
  • 99.22
  • 99.21
  • 99.08
  • 98.72
  • 98.33
  • 97.47
  • 97.44
  • 96.53
  • 94.22
  • 93.88
  • 93.69
  • 91.16
  • 61.54
  • 59.33
  • 54.18
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
250
  • 250
99.17
  • 99.17
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
317
  • 317
98.94
  • 98.94
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
337
  • 337
  • 340
  • 378
  • 390
  • 412
  • 457
  • 691
  • 753
  • 934
  • 1.17e3
98.88
  • 98.88
  • 98.87
  • 98.74
  • 98.70
  • 98.62
  • 98.47
  • 97.69
  • 97.48
  • 96.88
  • 96.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
386
  • 386
  • 453
  • 3.36e3
  • 6.23e3
98.71
  • 98.71
  • 98.49
  • 88.75
  • 79.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
403
  • 403
98.65
  • 98.65
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
497
  • 497
98.34
  • 98.34
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
565
  • 565
  • 1.29e4
98.11
  • 98.11
  • 56.66
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
629
  • 629
97.90
  • 97.90
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
631
  • 631
  • 5.82e3
  • 1.21e4
97.89
  • 97.89
  • 80.53
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
791
  • 791
97.35
  • 97.35
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
807
  • 807
  • 3.22e3
97.30
  • 97.30
  • 89.22
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
808
  • 808
  • 4.31e3
97.30
  • 97.30
  • 85.56
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
875
  • 875
97.07
  • 97.07
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
964
  • 964
96.78
  • 96.78
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.01e3
  • 1.01e3
96.64
  • 96.64
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.10e3
  • 1.10e3
  • 1.58e3
  • 1.63e3
96.31
  • 96.31
  • 94.73
  • 94.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
96.28
  • 96.28
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.21e3
  • 1.21e3
95.96
  • 95.96
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.60e3
  • 1.60e3
94.64
  • 94.64
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.75e3
  • 1.75e3
94.14
  • 94.14
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.78e3
  • 1.78e3
94.06
  • 94.06
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.12e3
  • 2.12e3
  • 3.79e3
92.90
  • 92.90
  • 87.32
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.28e3
  • 2.28e3
92.36
  • 92.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.77e3
  • 2.77e3
90.73
  • 90.73
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000104life cycle
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
  • 1.49e4
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
77.50
  • 77.50
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.86
  • 60.86
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.91
  • 44.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Chordata2 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000015111.

Cross-references

EnsemblENSDARG00000015111 (ddx39ab)
ZFINZDB-GENE-040426-2902 (ddx39ab)
EMBLBC044169, BC067555, BC128804, BC165847, BX248081, FP101915
Uniprot/SPTREMBLQ803W0, Q803W0_DANRE

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