D. rerio Gene: slc24a4a - ENSDARG00000015425 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015425
Nameslc24a4a
Descriptionsolute carrier family 24 (sodium/potassium/calcium exchanger), member 4a [Source:ZFIN;Acc:ZDB-GENE-050417-291]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:112072
Orthologs(s)17 orthologs
Paralog(s)7 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
3.40e3
  • 3.40e3
  • 7.31e3
  • 1.04e4
  • 1.23e4
  • 1.52e4
88.63
  • 88.63
  • 75.54
  • 65.19
  • 58.78
  • 49.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
4.27e3
  • 4.27e3
85.71
  • 85.71
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
5.62e3
  • 5.62e3
  • 5.99e3
  • 8.94e3
  • 1.21e4
  • 1.25e4
81.19
  • 81.19
  • 79.94
  • 70.07
  • 59.44
  • 58.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000104life cycle
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
6.15e3
  • 6.15e3
  • 9.69e3
  • 1.21e4
  • 1.37e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
  • 1.51e4
  • 1.53e4
  • 1.54e4
  • 1.61e4
79.40
  • 79.40
  • 67.55
  • 59.57
  • 54.15
  • 50.68
  • 50.24
  • 49.92
  • 49.50
  • 48.86
  • 48.46
  • 45.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.62e3
  • 6.62e3
  • 1.50e4
77.84
  • 77.84
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
6.64e3
  • 6.64e3
77.77
  • 77.77
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.84e3
  • 6.84e3
77.12
  • 77.12
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.18e3
  • 7.18e3
75.97
  • 75.97
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 8.40e3
  • 1.55e4
74.99
  • 74.99
  • 71.88
  • 48.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.53e3
  • 8.53e3
  • 9.33e3
71.43
  • 71.43
  • 68.74
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.58e3
  • 8.58e3
71.28
  • 71.28
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.68e3
  • 8.68e3
70.93
  • 70.93
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.73e3
  • 8.73e3
70.75
  • 70.75
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.95e3
  • 9.95e3
  • 1.26e4
  • 1.47e4
66.69
  • 66.69
  • 57.82
  • 50.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.08e4
  • 1.08e4
  • 1.12e4
63.87
  • 63.87
  • 62.48
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.25
  • 62.25
AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
  • 1.22e4
  • 1.24e4
59.99
  • 59.99
  • 59.08
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
  • 1.27e4
58.65
  • 58.65
  • 57.64
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.97
  • 56.97
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.37e4
  • 1.37e4
  • 1.42e4
54.27
  • 54.27
  • 52.39
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.43e4
  • 1.43e4
  • 1.46e4
  • 1.52e4
  • 1.90e4
  • 2.09e4
  • 2.19e4
52.03
  • 52.03
  • 51.19
  • 49.04
  • 36.28
  • 29.91
  • 26.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.55
  • 49.55
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.57
  • 48.57
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.06
  • 46.06
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.49
  • 35.49
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.52
  • 33.52
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.08
  • 33.08
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.41
  • 31.41
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.23
  • 28.23
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Chordata3 genesCompare expression
Bilateria4 genesCompare expression
Eukaryota7 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000015425.

Cross-references

EnsemblENSDARG00000015425 (slc24a4a)
ZFINZDB-GENE-050417-291 (slc24a4a)
EMBLBX571836
Uniprot/SPTREMBLF1RAZ0, F1RAZ0_DANRE

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