D. rerio Gene: racgap1 - ENSDARG00000015460 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015460
Nameracgap1
DescriptionRac GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1917]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb92c08, zgc:77839
Orthologs(s)26 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
408
  • 408
98.64
  • 98.64
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
460
  • 460
  • 1.11e3
  • 2.78e3
  • 3.74e3
  • 4.81e3
98.46
  • 98.46
  • 96.28
  • 90.71
  • 87.47
  • 83.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
1.25e3
  • 1.25e3
  • 2.17e3
  • 3.10e3
  • 3.90e3
  • 4.74e3
  • 5.15e3
95.83
  • 95.83
  • 92.73
  • 89.64
  • 86.96
  • 84.11
  • 82.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.71e3
  • 1.71e3
94.28
  • 94.28
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
1.85e3
  • 1.85e3
  • 2.97e3
  • 4.32e3
  • 4.80e3
  • 5.32e3
  • 5.44e3
  • 7.99e3
  • 9.35e3
  • 1.00e4
  • 1.18e4
93.80
  • 93.80
  • 90.05
  • 85.53
  • 83.94
  • 82.20
  • 81.78
  • 73.26
  • 68.68
  • 66.37
  • 60.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.60e3
  • 2.60e3
91.31
  • 91.31
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
2.76e3
  • 2.76e3
  • 3.03e3
  • 3.73e3
  • 4.46e3
  • 5.56e3
  • 5.88e3
  • 5.98e3
  • 7.28e3
  • 8.31e3
  • 8.57e3
  • 1.06e4
  • 1.10e4
  • 1.11e4
  • 1.12e4
90.77
  • 90.77
  • 89.86
  • 87.50
  • 85.07
  • 81.40
  • 80.30
  • 79.99
  • 75.63
  • 72.18
  • 71.30
  • 64.44
  • 63.23
  • 62.72
  • 62.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000098proliferative region
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000031Pharyngula:Prim-25
2.99e3
  • 2.99e3
  • 3.32e3
  • 3.32e3
  • 3.32e3
  • 3.73e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 5.97e3
  • 8.30e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.96e3
90.00
  • 90.00
  • 88.89
  • 88.89
  • 88.89
  • 87.50
  • 83.33
  • 83.33
  • 83.33
  • 80.00
  • 72.22
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.54e3
  • 3.54e3
88.14
  • 88.14
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.77e3
  • 3.77e3
87.37
  • 87.37
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.97e3
  • 3.97e3
86.70
  • 86.70
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.37e3
  • 4.37e3
  • 1.35e4
85.37
  • 85.37
  • 54.89
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.18e3
  • 5.18e3
82.66
  • 82.66
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.21e3
  • 5.21e3
82.56
  • 82.56
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
80.91
  • 80.91
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.31e3
  • 6.31e3
78.86
  • 78.86
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
6.94e3
  • 6.94e3
  • 8.05e3
  • 1.11e4
76.77
  • 76.77
  • 73.04
  • 62.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.03e3
  • 7.03e3
76.47
  • 76.47
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.15e3
  • 7.15e3
76.05
  • 76.05
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.32e3
  • 7.32e3
75.49
  • 75.49
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.41e3
  • 8.41e3
71.85
  • 71.85
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
8.51e3
  • 8.51e3
  • 1.34e4
  • 1.49e4
71.49
  • 71.49
  • 54.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.80e3
  • 8.80e3
70.54
  • 70.54
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
9.12e3
  • 9.12e3
69.48
  • 69.48
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.74e3
  • 9.74e3
67.38
  • 67.38
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.17e4
  • 1.32e4
66.64
  • 66.64
  • 60.69
  • 55.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
  • 2.06e4
64.16
  • 64.16
  • 31.12
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.85
  • 59.85
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.48
  • 59.48
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
  • 1.33e4
58.07
  • 58.07
  • 55.44
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.45
  • 56.45
AEIR
  • AEIR
UBERON:0004749blastodisc
  • UBERON:0000106zygote stage
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004750blastoderm
  • ZFS:0000019Gastrula:Shield
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.42
  • 48.42
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.32
  • 48.32
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
38.97
  • 38.97
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species20 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000015460.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Metazoa1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000015460.

Cross-references

EnsemblENSDARG00000015460 (racgap1)
ZFINZDB-GENE-030131-1917 (racgap1)
EMBLBC063983, CR354542
Uniprot/SPTREMBLE9QHH8, E9QHH8_DANRE, Q6P3H8, Q6P3H8_DANRE

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