D. rerio Gene: gpc4 - ENSDARG00000015472 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015472
Namegpc4
Descriptionglypican 4 [Source:ZFIN;Acc:ZDB-GENE-011119-1]
OrganismDanio rerio (zebrafish)
Synonym(s)chunp6920, fc47a08, fe05f10, gpc4,, gpc4/6, gpc6, kny, knypek, wu:fc47a08, wu:fe05f10

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
457
  • 457
  • 582
  • 599
  • 695
  • 1.15e3
98.46007
  • 98.46007
  • 98.03613
  • 97.97827
  • 97.65302
  • 96.10515
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
461
  • 461
  • 481
  • 513
  • 581
  • 886
  • 1.09e3
  • 1.36e3
  • 1.55e3
  • 1.63e3
  • 1.72e3
  • 1.78e3
  • 1.82e3
  • 1.96e3
  • 5.39e3
  • 6.58e3
  • 6.91e3
  • 6.97e3
98.44571
  • 98.44571
  • 98.37794
  • 98.26954
  • 98.03858
  • 97.01020
  • 96.30246
  • 95.39029
  • 94.75353
  • 94.49556
  • 94.19660
  • 93.97935
  • 93.83625
  • 93.38399
  • 81.79537
  • 77.76763
  • 76.65821
  • 76.46123
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.04e3
  • 1.04e3
  • 5.65e3
  • 6.78e3
96.49861
  • 96.49861
  • 80.91268
  • 77.08296
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.50e3
  • 1.50e3
  • 2.56e3
94.94105
  • 94.94105
  • 91.36000
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.74e3
  • 1.74e3
94.11067
  • 94.11067
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.89e3
  • 1.89e3
  • 1.91e3
  • 2.03e3
  • 2.55e3
  • 2.63e3
  • 2.68e3
  • 2.90e3
  • 3.26e3
  • 3.33e3
  • 3.95e3
93.60661
  • 93.60661
  • 93.55446
  • 93.13968
  • 91.37444
  • 91.12655
  • 90.94601
  • 90.21049
  • 88.98116
  • 88.76515
  • 86.66257
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.89e3
  • 1.89e3
93.60491
  • 93.60491
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.90e3
  • 1.90e3
93.57984
  • 93.57984
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
2.08e3
  • 2.08e3
  • 2.15e3
  • 2.24e3
92.97332
  • 92.97332
  • 92.74426
  • 92.43347
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.57e3
  • 2.57e3
91.31023
  • 91.31023
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.74e3
  • 2.74e3
90.73024
  • 90.73024
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
3.31e3
  • 3.31e3
88.80566
  • 88.80566
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.56e3
  • 3.56e3
  • 6.72e3
87.98211
  • 87.98211
  • 77.30222
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.78e3
  • 3.78e3
  • 6.21e3
  • 1.38e4
87.24161
  • 87.24161
  • 78.99994
  • 53.48975
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.80e3
  • 3.80e3
87.16570
  • 87.16570
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.01e3
  • 4.01e3
86.45500
  • 86.45500
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.58e3
  • 4.58e3
  • 4.77e3
84.51780
  • 84.51780
  • 83.88792
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.71e3
  • 4.71e3
84.08205
  • 84.08205
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.07e3
  • 5.07e3
82.88071
  • 82.88071
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
6.01e3
  • 6.01e3
  • 1.23e4
79.70020
  • 79.70020
  • 58.32826
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.62e3
  • 6.62e3
77.63169
  • 77.63169
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.91e3
  • 6.91e3
76.66165
  • 76.66165
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.23e3
  • 7.23e3
75.56318
  • 75.56318
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.75e3
  • 7.75e3
73.81093
  • 73.81093
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
67.12690
  • 67.12690
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.51097
  • 59.51097
AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000020Gastrula:75%-epiboly
1.25e4
  • 1.25e4
57.67708
  • 57.67708
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
1.32e4
  • 1.32e4
55.53188
  • 55.53188
AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • ZFS:0000007Cleavage:64-cell
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX530080, BX537135
EnsemblENSDARG00000015472 (gpc4)
Uniprot/SPTREMBLF1QKN6, F1QKN6_DANRE
ZFINZDB-GENE-011119-1 (gpc4)

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