D. rerio Gene: gpc4 - ENSDARG00000015472 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015472
Namegpc4
Descriptionglypican 4 [Source:ZFIN;Acc:ZDB-GENE-011119-1]
OrganismDanio rerio (zebrafish)
Synonym(s)chunp6920, fc47a08, fe05f10, gpc4,, gpc4/6, gpc6, kny, knypek, wu:fc47a08, wu:fe05f10
Orthologs(s)7 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
460
  • 460
  • 586
  • 603
  • 700
  • 1.41e3
  • 1.56e3
98.46
  • 98.46
  • 98.04
  • 97.98
  • 97.66
  • 95.28
  • 94.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
464
  • 464
  • 484
  • 517
  • 585
  • 892
  • 1.10e3
  • 1.37e3
  • 1.56e3
  • 1.64e3
  • 1.73e3
  • 1.80e3
  • 1.84e3
  • 1.97e3
  • 5.43e3
  • 6.64e3
  • 6.97e3
  • 7.03e3
98.45
  • 98.45
  • 98.38
  • 98.27
  • 98.04
  • 97.02
  • 96.31
  • 95.40
  • 94.76
  • 94.51
  • 94.21
  • 93.99
  • 93.85
  • 93.40
  • 81.83
  • 77.77
  • 76.66
  • 76.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
1.04e3
  • 1.04e3
  • 2.35e3
  • 5.69e3
  • 5.74e3
  • 6.83e3
96.51
  • 96.51
  • 92.12
  • 80.95
  • 80.79
  • 77.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.51e3
  • 1.51e3
  • 2.58e3
94.95
  • 94.95
  • 91.38
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.76e3
  • 1.76e3
94.12
  • 94.12
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.85e3
  • 1.85e3
  • 3.97e3
93.81
  • 93.81
  • 86.72
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.91e3
  • 1.91e3
  • 1.92e3
  • 2.05e3
  • 2.63e3
  • 2.70e3
  • 2.85e3
  • 2.90e3
  • 3.28e3
  • 3.33e3
  • 3.95e3
93.62
  • 93.62
  • 93.57
  • 93.15
  • 91.20
  • 90.97
  • 90.47
  • 90.29
  • 89.00
  • 88.87
  • 86.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.91e3
  • 1.91e3
93.62
  • 93.62
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.91e3
  • 1.91e3
93.59
  • 93.59
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.16e3
  • 2.16e3
  • 2.46e3
  • 2.80e3
92.76
  • 92.76
  • 91.78
  • 90.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.57e3
  • 2.57e3
91.39
  • 91.39
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.76e3
  • 2.76e3
90.75
  • 90.75
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.58e3
  • 3.58e3
  • 7.53e3
88.01
  • 88.01
  • 74.79
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.80e3
  • 3.80e3
  • 6.26e3
  • 1.16e4
  • 1.39e4
87.27
  • 87.27
  • 79.05
  • 61.06
  • 53.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.83e3
  • 3.83e3
87.19
  • 87.19
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.97e3
  • 3.97e3
86.71
  • 86.71
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.15e3
  • 4.15e3
86.09
  • 86.09
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
85.69
  • 85.69
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.58e3
  • 4.58e3
  • 4.77e3
84.66
  • 84.66
  • 84.04
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
83.20
  • 83.20
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.93e3
  • 5.93e3
80.13
  • 80.13
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
6.01e3
  • 6.01e3
  • 1.24e4
79.89
  • 79.89
  • 58.33
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.62e3
  • 6.62e3
77.84
  • 77.84
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.91e3
  • 6.91e3
76.88
  • 76.88
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.23e3
  • 7.23e3
75.79
  • 75.79
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.53e3
  • 7.53e3
74.77
  • 74.77
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.80e3
  • 7.80e3
73.87
  • 73.87
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.68e3
  • 8.68e3
70.95
  • 70.95
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
67.43
  • 67.43
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.89
  • 59.89
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.75
  • 58.75
AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000020Gastrula:75%-epiboly
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • ZFS:0000007Cleavage:64-cell
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species7 genesCompare expression

Orthology information comes from OMA : ENSDARG00000015472.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Deuterostomia2 genesCompare expression
Bilateria4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000015472.

Cross-references

EnsemblENSDARG00000015472 (gpc4)
ZFINZDB-GENE-011119-1 (gpc4)
EMBLBX530080, BX537135
Uniprot/SPTREMBLF1QKN6, F1QKN6_DANRE

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