D. rerio Gene: zic1 - ENSDARG00000015567 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015567
Namezic1
Descriptionzic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
OrganismDanio rerio (zebrafish)
Synonym(s)odd-paired-like, opl, wu:fj51c06, zgc:136736

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
  • ZFS:0000025Segmentation:10-13 somites
459
  • 459
  • 2.96e3
  • 3.46e3
  • 5.92e3
  • 1.21e4
  • 1.33e4
  • 1.44e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
  • 3.55e3
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.41e3
  • 1.41e3
  • 2.22e3
  • 6.91e3
  • 7.40e3
  • 7.40e3
  • 9.25e3
  • 9.51e3
  • 1.07e4
  • 1.13e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.48e3
  • 1.48e3
  • 3.70e3
  • 7.75e3
  • 8.14e3
  • 8.88e3
  • 1.03e4
  • 1.04e4
  • 1.18e4
  • 1.37e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.56e3
  • 1.56e3
  • 2.47e3
  • 5.55e3
  • 6.17e3
  • 7.01e3
  • 7.40e3
  • 9.05e3
  • 9.25e3
  • 1.25e4
  • 1.25e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
1.56e3
  • 1.56e3
  • 2.44e3
  • 2.56e3
  • 2.87e3
  • 3.72e3
  • 3.86e3
  • 4.49e3
  • 4.98e3
  • 5.13e3
  • 5.35e3
  • 5.55e3
  • 7.09e3
  • 1.16e4
  • 1.37e4
  • 1.46e4
  • 1.49e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.64e3
  • 1.64e3
  • 3.70e3
  • 9.58e3
  • 9.87e3
  • 1.05e4
  • 1.06e4
  • 1.16e4
  • 1.21e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
2.11e3
  • 2.11e3
  • 3.95e3
  • 6.97e3
  • 6.97e3
  • 7.01e3
  • 7.97e3
  • 9.25e3
  • 1.16e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
2.51e3
  • 2.51e3
  • 2.60e3
  • 2.73e3
  • 2.85e3
  • 2.99e3
  • 3.50e3
  • 4.58e3
  • 6.34e3
  • 6.39e3
  • 7.05e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000098proliferative region
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.96e3
  • 2.96e3
  • 2.96e3
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
3.31e3
  • 3.31e3
  • 3.62e3
  • 3.85e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
4.44e3
  • 4.44e3
  • 7.08e3
  • 8.14e3
  • 1.33e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
4.48e3
  • 4.48e3
  • 6.47e3
  • 6.93e3
  • 1.08e4
  • 1.45e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
4.60e3
  • 4.60e3
  • 8.64e3
  • 8.75e3
  • 8.88e3
  • 9.25e3
  • 1.02e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.76e3
  • 4.76e3
  • 8.14e3
  • 8.14e3
  • 9.35e3
  • 9.58e3
  • 1.14e4
  • 1.21e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000023Segmentation:1-4 somites
4.93e3
  • 4.93e3
  • 7.97e3
  • 7.97e3
  • 9.35e3
  • 1.14e4
  • 1.14e4
  • 1.14e4
  • 1.41e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.96e3
  • 4.96e3
AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
5.55e3
  • 5.55e3
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
5.69e3
  • 5.69e3
  • 1.23e4
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.20e3
  • 6.20e3
AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
6.34e3
  • 6.34e3
  • 6.83e3
  • 6.83e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000022Gastrula:Bud
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
7.40e3
  • 7.40e3
  • 8.22e3
AEIR
  • AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
7.40e3
  • 7.40e3
  • 9.11e3
  • 9.87e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.86e3
  • 7.86e3
AEIR
  • AEIR
UBERON:0003098optic stalk
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.89e3
  • 7.89e3
  • 8.22e3
  • 8.46e3
  • 8.46e3
  • 1.11e4
  • 1.18e4
  • 1.21e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
8.40e3
  • 8.40e3
AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
8.63e3
  • 8.63e3
  • 8.63e3
  • 9.11e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.63e3
  • 8.63e3
  • 8.63e3
  • 8.63e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
9.83e3
  • 9.83e3
  • 1.05e4
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
AEIR
  • AEIR
UBERON:0006238future brain
  • ZFS:0000020Gastrula:75%-epiboly
1.18e4
  • 1.18e4
AEIR
  • AEIR
UBERON:0005511rhombomere 4
  • ZFS:0000027Segmentation:20-25 somites
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000026Segmentation:14-19 somites
1.30e4
  • 1.30e4
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.42e4
  • 1.42e4
AEIR
  • AEIR
UBERON:0007284presumptive neural plate
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0008781blastodisc derived epiblast
  • ZFS:0000021Gastrula:90%-epiboly
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0001944pretectal region
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0009611midbrain neural plate
  • ZFS:0000021Gastrula:90%-epiboly
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2007014anterior presumptive neural plate
  • ZFS:0000020Gastrula:75%-epiboly
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0006240future forebrain
  • ZFS:0000020Gastrula:75%-epiboly
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0009610forebrain neural plate
  • ZFS:0000021Gastrula:90%-epiboly
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000023Segmentation:1-4 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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