D. rerio Gene: cyp3c1 - ENSDARG00000015575 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015575
Namecyp3c1
Descriptioncytochrome P450, family 3, subfamily c, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3060]
OrganismDanio rerio (zebrafish)
Synonym(s)cyp3a, wu:fa96d12, wu:fc26b04, zgc:56626

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
710
  • 710
97.60364
  • 97.60364
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.09e3
  • 1.09e3
96.30913
  • 96.30913
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
96.24829
  • 96.24829
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.12e3
  • 1.12e3
96.23270
  • 96.23270
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.69e3
  • 1.69e3
94.28118
  • 94.28118
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.23e3
  • 2.23e3
92.46954
  • 92.46954
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.40e3
  • 2.40e3
  • 5.07e3
91.90171
  • 91.90171
  • 82.88088
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
2.71e3
  • 2.71e3
  • 3.77e3
  • 4.76e3
90.85553
  • 90.85553
  • 87.25162
  • 83.93129
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.73e3
  • 2.73e3
90.78384
  • 90.78384
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.61470
  • 90.61470
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
2.92e3
  • 2.92e3
  • 7.30e3
  • 8.06e3
  • 9.61e3
  • 9.74e3
  • 9.97e3
  • 1.06e4
  • 1.07e4
  • 1.11e4
  • 1.27e4
90.13523
  • 90.13523
  • 75.32942
  • 72.76409
  • 67.53249
  • 67.09986
  • 66.29703
  • 64.33938
  • 63.96076
  • 62.45923
  • 57.09428
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
2.95e3
  • 2.95e3
  • 3.91e3
  • 4.23e3
  • 6.01e3
  • 6.43e3
  • 9.34e3
  • 1.01e4
  • 1.05e4
  • 1.06e4
  • 1.07e4
  • 1.07e4
  • 1.10e4
  • 1.10e4
  • 1.18e4
  • 1.33e4
  • 1.40e4
90.02705
  • 90.02705
  • 86.79556
  • 85.69682
  • 79.68287
  • 78.25735
  • 68.42896
  • 65.85153
  • 64.51514
  • 64.30463
  • 63.93316
  • 63.91808
  • 62.93437
  • 62.79710
  • 60.01798
  • 55.04669
  • 52.62823
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.35e3
  • 3.35e3
88.67727
  • 88.67727
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.61e3
  • 3.61e3
  • 6.01e3
87.80645
  • 87.80645
  • 79.70281
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.98e3
  • 3.98e3
86.56198
  • 86.56198
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
84.46927
  • 84.46927
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
7.10e3
  • 7.10e3
  • 7.78e3
  • 1.29e4
76.01653
  • 76.01653
  • 73.70564
  • 56.52551
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
8.32e3
  • 8.32e3
  • 8.88e3
  • 1.18e4
  • 1.21e4
71.89631
  • 71.89631
  • 69.98533
  • 59.98986
  • 59.07907
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.25e3
  • 9.25e3
68.73128
  • 68.73128
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.54e3
  • 9.54e3
67.74511
  • 67.74511
AEIR
  • AEIR
CL:0000319mucus secreting cell
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.87e3
  • 9.87e3
  • 9.87e3
  • 1.11e4
  • 1.15e4
  • 1.18e4
  • 1.37e4
  • 1.37e4
  • 1.37e4
66.65990
  • 66.65990
  • 66.65990
  • 62.49323
  • 61.10267
  • 59.98986
  • 53.82925
  • 53.82925
  • 53.82925
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.02e4
  • 1.02e4
  • 1.11e4
65.37279
  • 65.37279
  • 62.48816
AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
  • 1.43e4
64.28063
  • 64.28063
  • 51.51488
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.06e4
  • 1.06e4
64.09562
  • 64.09562
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.09e4
  • 1.09e4
  • 1.16e4
63.31813
  • 63.31813
  • 60.69907
AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.11e4
  • 1.11e4
  • 1.11e4
  • 1.23e4
  • 1.33e4
  • 1.33e4
  • 1.40e4
62.48309
  • 62.48309
  • 62.48309
  • 58.31136
  • 54.97294
  • 54.97294
  • 52.60453
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
1.12e4
  • 1.12e4
  • 1.18e4
  • 1.19e4
  • 1.19e4
  • 1.32e4
62.04701
  • 62.04701
  • 60.01450
  • 59.94450
  • 59.69621
  • 55.28011
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.13e4
  • 1.13e4
61.94763
  • 61.94763
AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.13e4
  • 1.13e4
  • 1.13e4
  • 1.20e4
  • 1.22e4
61.74610
  • 61.74610
  • 61.74610
  • 59.35640
  • 58.80324
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.16e4
  • 1.16e4
  • 1.21e4
60.69907
  • 60.69907
  • 59.07907
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.18e4
  • 1.18e4
60.02160
  • 60.02160
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
1.25e4
  • 1.25e4
57.87109
  • 57.87109
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.33e4
  • 1.33e4
55.04348
  • 55.04348
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.33e4
  • 1.33e4
  • 1.40e4
  • 1.40e4
54.97294
  • 54.97294
  • 52.75244
  • 52.75244
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000037Larval:Day 5
1.48e4
  • 1.48e4
49.99493
  • 49.99493
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
49.93916
  • 49.93916
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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