D. rerio Gene: msx3 - ENSDARG00000015674 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015674
Namemsx3
Descriptionmuscle segment homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-980526-306]
OrganismDanio rerio (zebrafish)
Synonym(s)etid309953.13, homeobox, msh-c, mshc, msx-c, msxc, zgc:86596

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
2.70e3
  • 2.70e3
  • 2.99e3
  • 3.40e3
  • 3.87e3
  • 4.40e3
  • 4.47e3
  • 4.72e3
  • 4.73e3
  • 5.03e3
  • 9.25e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.56e3
  • 3.56e3
  • 5.41e3
AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
3.70e3
  • 3.70e3
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.81e3
  • 3.81e3
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
4.12e3
  • 4.12e3
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
4.23e3
  • 4.23e3
  • 4.23e3
  • 4.39e3
  • 4.59e3
  • 4.92e3
  • 6.05e3
  • 6.21e3
  • 6.32e3
  • 6.82e3
  • 7.38e3
  • 9.88e3
  • 1.02e4
  • 1.12e4
  • 1.13e4
  • 1.16e4
  • 1.29e4
  • 1.48e4
  • 1.48e4
  • 1.49e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.55e3
  • 4.55e3
  • 1.21e4
  • 1.26e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008781blastodisc derived epiblast
  • ZFS:0000020Gastrula:75%-epiboly
4.93e3
  • 4.93e3
AEIR
  • AEIR
UBERON:2000225lateral crista primordium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
4.93e3
  • 4.93e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
UBERON:2000411posterior crista primordium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
4.93e3
  • 4.93e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
UBERON:2000468anterior crista primordium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
4.93e3
  • 4.93e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.98e3
  • 4.98e3
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000037Larval:Day 5
5.29e3
  • 5.29e3
  • 9.11e3
  • 9.51e3
  • 9.51e3
  • 9.87e3
  • 1.01e4
  • 1.04e4
  • 1.04e4
  • 1.11e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
5.29e3
  • 5.29e3
  • 6.25e3
  • 6.38e3
  • 7.99e3
  • 1.15e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
5.80e3
  • 5.80e3
  • 6.59e3
  • 7.99e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.06e3
  • 6.06e3
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.16e3
  • 6.16e3
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.20e3
  • 7.20e3
  • 1.59e4
AEIR
  • AEIR
  • AEIR
UBERON:0005724roof plate spinal cord region
  • ZFS:0000029Pharyngula:Prim-5
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:2000414presumptive cephalic mesoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
7.40e3
  • 7.40e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:2000912mesenchyme median fin fold
  • ZFS:0000033Hatching:Long-pec
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:2002215otic vesicle protrusion
  • ZFS:0000034Hatching:Pec-fin
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0003934mesenchyme pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.40e3
  • 7.40e3
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
7.40e3
  • 7.40e3
  • 7.40e3
  • 7.89e3
  • 8.88e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
8.14e3
  • 8.14e3
  • 9.86e3
  • 1.01e4
  • 1.27e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
8.46e3
  • 8.46e3
  • 9.86e3
  • 9.87e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
9.52e3
  • 9.52e3
  • 1.32e4
AEIR
  • AEIR
  • AEIR
UBERON:0000089hypoblast (generic)
  • ZFS:0000020Gastrula:75%-epiboly
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.86e3
  • 9.86e3
  • 1.18e4
AEIR
  • AEIR
  • AEIR
UBERON:2000006ball
  • ZFS:0000033Hatching:Long-pec
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.02e4
  • 1.02e4
  • 1.27e4
AEIR
  • AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.06e4
  • 1.06e4
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.09e4
  • 1.09e4
  • 1.09e4
  • 1.11e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
1.09e4
  • 1.09e4
  • 1.09e4
  • 1.13e4
  • 1.28e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000027Segmentation:20-25 somites
1.11e4
  • 1.11e4
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.17e4
  • 1.17e4
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
AEIR
  • AEIR
UBERON:2000040median fin fold
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
  • 1.37e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
1.32e4
  • 1.32e4
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.35e4
  • 1.35e4
AEIR
  • AEIR
UBERON:2005316fin fold pectoral fin bud
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0003076posterior neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0005420pelvic appendage bud
  • ZFS:0000041Larval:Days 21-29
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0007274crista of ampulla of anterior semicircular duct of membranous laybrinth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0007275crista of ampulla of posterior semicircular duct of membranous laybrinth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0007276crista of ampulla of lateral semicircular duct of membranous laybrinth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:2000298vent
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000054macula
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0007297presumptive pronephric mesoderm
  • ZFS:0000022Gastrula:Bud
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000024Segmentation:5-9 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL831745
EnsemblENSDARG00000015674 (msx3)
Uniprot/SPTREMBLQ7ZZ01, Q7ZZ01_DANRE
ZFINZDB-GENE-980526-306 (msx3)

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