D. rerio Gene: aarsd1 - ENSDARG00000015747 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015747
Nameaarsd1
Descriptionalanyl-tRNA synthetase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-91]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7152658, zgc:101066
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
2.55e3
  • 2.55e3
  • 5.43e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 9.13e3
  • 1.46e4
  • 1.50e4
91.46
  • 91.46
  • 81.81
  • 74.99
  • 74.99
  • 73.52
  • 69.43
  • 51.01
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.08e3
  • 5.08e3
  • 5.49e3
  • 7.35e3
  • 8.15e3
  • 1.06e4
83.00
  • 83.00
  • 81.61
  • 75.41
  • 72.70
  • 64.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.33e3
  • 6.33e3
  • 8.58e3
78.82
  • 78.82
  • 71.26
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.21e3
  • 7.21e3
75.86
  • 75.86
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.25e3
  • 7.25e3
75.72
  • 75.72
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
7.59e3
  • 7.59e3
74.60
  • 74.60
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.64e3
  • 7.64e3
74.42
  • 74.42
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
73.82
  • 73.82
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
72.01
  • 72.01
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
8.37e3
  • 8.37e3
  • 8.55e3
71.97
  • 71.97
  • 71.39
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.51e3
  • 8.51e3
  • 1.01e4
71.52
  • 71.52
  • 66.23
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.82e3
  • 8.82e3
  • 1.22e4
70.48
  • 70.48
  • 59.28
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.34e3
  • 9.34e3
68.72
  • 68.72
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.60e3
  • 9.60e3
67.87
  • 67.87
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.02e4
  • 1.02e4
65.73
  • 65.73
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.37
  • 65.37
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.04e4
  • 1.04e4
  • 1.16e4
65.34
  • 65.34
  • 61.30
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.27
  • 65.27
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.84
  • 64.84
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.22
  • 64.22
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.88
  • 63.88
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.58
  • 62.58
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.23
  • 61.23
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.01
  • 61.01
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
1.21e4
  • 1.21e4
  • 1.23e4
  • 1.38e4
59.50
  • 59.50
  • 58.67
  • 53.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.94
  • 57.94
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.00
  • 43.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species17 genesCompare expression
Bilateria22 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000015747.

Cross-references

EnsemblENSDARG00000015747 (aarsd1)
ZFINZDB-GENE-040801-91 (aarsd1)
EMBLBX248126
Uniprot/SPTREMBLF1QPA7, F1QPA7_DANRE

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