Gene: atp1b3a - ENSDARG00000015790 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000015790
Name	atp1b3a
Description	ATPase, Na+/K+ transporting, beta 3a polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-167]
Organism	Danio rerio (zebrafish)
Synonym(s)	atp1b3, cb713, etid309715.2, nakatpb, wu:fa14a07
Orthologs(s)	22 orthologs
Paralog(s)	5 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 6 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage ZFS:0000030Pharyngula:Prim-15 ZFS:0000032Pharyngula:High-pec	350 350 1.56e3 1.56e3 1.01e4 1.04e4 1.05e4	98.83 98.83 94.79 94.76 66.29 65.19 64.98	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 10 stages ZFS:0000031Pharyngula:Prim-25 ZFS:0000025Segmentation:10-13 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec ZFS:0000026Segmentation:14-19 somites ZFS:0000024Segmentation:5-9 somites UBERON:0004707pharyngula stage ZFS:0000030Pharyngula:Prim-15 ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage	729 729 1.03e3 1.06e3 1.06e3 1.09e3 1.18e3 1.20e3 1.30e3 1.34e3 1.68e3	97.56 97.56 96.55 96.45 96.44 96.35 96.04 95.99 95.65 95.53 94.39	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000955	brain	[+] 3 stages ZFS:0000031Pharyngula:Prim-25 UBERON:0000066fully formed stage ZFS:0000035Larval:Protruding-mouth	845 845 1.83e3 1.36e4	97.18 97.18 93.86 54.53	AEIR AEIR AEIR AEIR
UBERON:0003077	paraxial mesoderm	[+] 1 stage ZFS:0000025Segmentation:10-13 somites	939 939	96.86 96.86	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	953 953 4.64e3	96.81 96.81 84.47	AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 6 stages ZFS:0000020Gastrula:75%-epiboly ZFS:0000022Gastrula:Bud ZFS:0000021Gastrula:90%-epiboly ZFS:0000017Gastrula:50%-epiboly ZFS:0000019Gastrula:Shield UBERON:0000109gastrula stage	1.01e3 1.01e3 1.17e3 1.89e3 2.05e3 4.46e3 5.09e3	96.63 96.63 96.08 93.66 93.14 85.08 82.97	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:4000164	caudal fin	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000033Hatching:Long-pec	1.10e3 1.10e3 1.38e3	96.31 96.31 95.37	AEIR AEIR AEIR
UBERON:0003059	presomitic mesoderm	[+] 3 stages ZFS:0000025Segmentation:10-13 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites	1.12e3 1.12e3 9.25e3 9.51e3	96.27 96.27 69.03 68.16	AEIR AEIR AEIR AEIR
UBERON:0002329	somite	[+] 1 stage ZFS:0000025Segmentation:10-13 somites	1.16e3 1.16e3	96.11 96.11	AEIR AEIR
UBERON:0002548	larva	[+] 3 stages ZFS:0000035Larval:Protruding-mouth UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.22e3 1.22e3 1.25e3 1.95e3	95.93 95.93 95.81 93.47	AEIR AEIR AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 16 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000037Larval:Day 5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000036Larval:Day 4 ZFS:0000024Segmentation:5-9 somites ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 ZFS:0000022Gastrula:Bud ZFS:0000021Gastrula:90%-epiboly ZFS:0000020Gastrula:75%-epiboly ZFS:0000040Larval:Days 14-20 ZFS:0000019Gastrula:Shield ZFS:0000042Juvenile:Days 30-44 UBERON:0000066fully formed stage UBERON:0000068embryo stage ZFS:0000049segmentation	1.27e3 1.27e3 1.42e3 1.56e3 1.61e3 1.62e3 1.77e3 1.78e3 1.81e3 1.83e3 2.18e3 3.02e3 3.34e3 5.18e3 1.46e4 1.46e4 1.49e4	95.74 95.74 95.25 94.78 94.61 94.56 94.06 94.03 93.94 93.89 92.71 89.89 88.83 82.65 51.12 51.01 49.95	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0009620	tail bud paraxial mesoderm	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	2.78e3 2.78e3	90.70 90.70	AEIR AEIR
UBERON:0001905	pineal body	[+] 8 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000028Segmentation:26+ somites ZFS:0000033Hatching:Long-pec ZFS:0000026Segmentation:14-19 somites ZFS:0000032Pharyngula:High-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	4.98e3 4.98e3 7.83e3 8.40e3 9.44e3 9.60e3 9.96e3 1.03e4 1.08e4	83.33 83.33 73.79 71.86 68.40 67.85 66.65 65.61 63.87	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:2000088	YSL	[+] 14 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000020Gastrula:75%-epiboly ZFS:0000019Gastrula:Shield ZFS:0000017Gastrula:50%-epiboly ZFS:0000018Gastrula:Germ-ring ZFS:0000021Gastrula:90%-epiboly ZFS:0000022Gastrula:Bud	4.98e3 4.98e3 4.98e3 4.98e3 6.15e3 6.15e3 6.54e3 8.79e3 8.79e3 1.03e4 1.05e4 1.07e4 1.07e4 1.07e4 1.07e4	83.33 83.33 83.33 83.33 79.40 79.40 78.12 70.57 70.57 65.37 64.69 64.27 64.27 64.27 64.27	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 ZFS:0000035Larval:Protruding-mouth	5.53e3 5.53e3 1.21e4	81.50 81.50 59.59	AEIR AEIR AEIR
UBERON:0002028	hindbrain	[+] 7 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000031Pharyngula:Prim-25 ZFS:0000030Pharyngula:Prim-15 ZFS:0000025Segmentation:10-13 somites	5.69e3 5.69e3 8.22e3 8.22e3 9.07e3 1.04e4 1.05e4 1.49e4	80.94 80.94 72.48 72.48 69.62 65.19 64.98 50.00	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001891	midbrain	[+] 5 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000035Larval:Protruding-mouth	5.81e3 5.81e3 7.12e3 7.47e3 8.96e3 1.34e4	80.55 80.55 76.18 74.99 69.98 54.99	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001894	diencephalon	[+] 6 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	6.64e3 6.64e3 7.15e3 8.65e3 8.72e3 1.04e4 1.09e4	77.77 77.77 76.07 71.04 70.81 65.19 63.61	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001893	telencephalon	[+] 5 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	7.08e3 7.08e3 7.47e3 8.09e3 1.10e4 1.10e4	76.30 76.30 74.99 72.90 63.14 63.14	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	7.14e3 7.14e3	76.08 76.08	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	7.31e3 7.31e3	75.52 75.52	AEIR AEIR
UBERON:0005075	forebrain-midbrain boundary	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	7.47e3 7.47e3	75.00 75.00	AEIR AEIR
UBERON:2000058	polster	[+] 4 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000022Gastrula:Bud	7.47e3 7.47e3 8.30e3 8.96e3 1.49e4	74.99 74.99 72.21 69.98 49.99	AEIR AEIR AEIR AEIR AEIR
UBERON:2001357	alar plate midbrain	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	7.47e3 7.47e3 7.86e3 7.86e3	74.99 74.99 73.67 73.67	AEIR AEIR AEIR AEIR
UBERON:0001049	neural tube	[+] 4 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000026Segmentation:14-19 somites	7.80e3 7.80e3 8.22e3 8.22e3 8.96e3	73.90 73.90 72.48 72.48 69.98	AEIR AEIR AEIR AEIR AEIR
UBERON:0001945	superior colliculus	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites	7.83e3 7.83e3 7.86e3 7.86e3	73.79 73.79 73.67 73.67	AEIR AEIR AEIR AEIR
UBERON:0004128	optic vesicle	[+] 3 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5	7.91e3 7.91e3 7.91e3 7.91e3	73.52 73.52 73.52 73.52	AEIR AEIR AEIR AEIR
UBERON:0002240	spinal cord	[+] 6 stages ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000035Larval:Protruding-mouth	8.22e3 8.22e3 8.22e3 9.61e3 1.02e4 1.09e4 1.34e4	72.48 72.48 72.48 67.83 65.89 63.61 54.99	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	8.32e3 8.32e3	72.16 72.16	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000016Blastula:30%-epiboly ZFS:0000015Blastula:Dome	8.70e3 8.70e3 1.14e4	70.88 70.88 61.71	AEIR AEIR AEIR
UBERON:2000083	ventral mesoderm	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	8.79e3 8.79e3	70.57 70.57	AEIR AEIR
UBERON:0002037	cerebellum	[+] 2 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	8.96e3 8.96e3 9.34e3	69.99 69.99 68.74	AEIR AEIR AEIR
UBERON:0002533	post-anal tail bud	[+] 6 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000022Gastrula:Bud ZFS:0000027Segmentation:20-25 somites	9.13e3 9.13e3 9.13e3 9.13e3 9.44e3 1.28e4 1.36e4	69.43 69.43 69.43 69.43 68.40 57.14 54.53	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001017	central nervous system	[+] 3 stages ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth	9.19e3 9.19e3 9.60e3 1.28e4	69.22 69.22 67.85 57.14	AEIR AEIR AEIR AEIR
UBERON:0004750	blastoderm	[+] 1 stage ZFS:0000020Gastrula:75%-epiboly	9.96e3 9.96e3	66.67 66.67	AEIR AEIR
UBERON:0010170	region of neural crest	[+] 3 stages ZFS:0000025Segmentation:10-13 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites	9.96e3 9.96e3 9.96e3 9.96e3	66.66 66.66 66.65 66.65	AEIR AEIR AEIR AEIR
UBERON:0001943	midbrain tegmentum	[+] 2 stages ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	1.03e4 1.03e4 1.05e4	65.61 65.61 64.69	AEIR AEIR AEIR
UBERON:0001846	internal ear	[+] 1 stage UBERON:0000068embryo stage	1.11e4 1.11e4	62.90 62.90	AEIR AEIR
UBERON:0010312	immature eye	[+] 3 stages ZFS:0000024Segmentation:5-9 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000027Segmentation:20-25 somites	1.12e4 1.12e4 1.33e4 1.34e4	62.50 62.50 55.53 55.24	AEIR AEIR AEIR AEIR
UBERON:2000004	anterior axial hypoblast	[+] 6 stages ZFS:0000017Gastrula:50%-epiboly ZFS:0000018Gastrula:Germ-ring ZFS:0000019Gastrula:Shield ZFS:0000021Gastrula:90%-epiboly ZFS:0000022Gastrula:Bud ZFS:0000020Gastrula:75%-epiboly	1.17e4 1.17e4 1.17e4 1.17e4 1.17e4 1.17e4 1.20e4	60.70 60.70 60.70 60.70 60.70 60.70 59.98	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0004879	marginal zone of embryo	[+] 6 stages ZFS:0000020Gastrula:75%-epiboly ZFS:0000019Gastrula:Shield ZFS:0000021Gastrula:90%-epiboly ZFS:0000018Gastrula:Germ-ring ZFS:0000022Gastrula:Bud ZFS:0000017Gastrula:50%-epiboly	1.18e4 1.18e4 1.26e4 1.28e4 1.29e4 1.29e4 1.31e4	60.50 60.50 57.87 57.13 56.65 56.65 56.23	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001792	ganglionic layer of retina	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.28e4 1.28e4	57.14 57.14	AEIR AEIR
UBERON:0001791	inner nuclear layer of retina	[+] 1 stage ZFS:0000035Larval:Protruding-mouth	1.36e4 1.36e4	54.53 54.53	AEIR AEIR
UBERON:0006222	future diencephalon	[+] 2 stages ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites	1.37e4 1.37e4 1.38e4	54.15 54.15 53.83	AEIR AEIR AEIR
UBERON:0003299	roof plate of midbrain	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0009841	upper rhombic lip	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:2001156	posterior lateral line placode	[+] 2 stages ZFS:0000025Segmentation:10-13 somites ZFS:0000027Segmentation:20-25 somites	1.49e4 1.49e4 1.49e4	50.00 50.00 50.00	AEIR AEIR AEIR
UBERON:2001316	anterior lateral line placode	[+] 1 stage ZFS:0000025Segmentation:10-13 somites	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:2007031	anterior neural rod	[+] 1 stage ZFS:0000024Segmentation:5-9 somites	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:2001069	ventral fin fold	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.58e4 1.58e4	47.12 47.12	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.65e4 1.65e4	44.87 44.87	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.66e4 1.66e4	44.54 44.54	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.67e4 1.67e4	44.23 44.23	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.72e4 1.72e4	42.56 42.56	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.80e4 1.80e4	39.63 39.63	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.86e4 1.86e4	37.59 37.59	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	22 genes ENSG00000069849 ATP1B3 ENSMUSG00000032412 Atp1b3 ENSPTRG00000015476 ATP1B3 ENSGGOG00000025300 ATP1B3 ENSGGOG00000027111 ENSMMUG00000007203 ENSMMUG00000012256 ATP1B3 ENSRNOG00000011501 Atp1b3 ENSBTAG00000014140 ATP1B3 ENSSSCG00000011676 ENSSSCG00000014896 ENSECAG00000019885 ATP1B3 ENSOCUG00000000338 ATP1B3 ENSCAFG00000007731 ATP1B3 ENSFCAG00000030431 ATP1B3 ENSCPOG00000003739 Atp1b3 ENSCPOG00000012983 ENSEEUG00000001457 ATP1B3 ENSOANG00000000433 ATP1B3 ENSGALG00000002764 ATP1B3 ENSACAG00000005114 ATP1B3 ENSXETG00000014751 atp1b3	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000015790.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	1 gene ENSDARG00000042837 atp1b3b	Compare expression	[+]
Deuterostomia	5 genes ENSDARG00000013144 atp1b1a ENSDARG00000034424 atp1b2b ENSDARG00000042837 atp1b3b ENSDARG00000076833 atp1b1b ENSDARG00000099203 atp1b2a	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000015790.

Cross-references

Ensembl	ENSDARG00000015790 (atp1b3a)
ZFIN	ZDB-GENE-990415-167 (atp1b3a)
EMBL	AF469651, BC059426, BC065944, CR377211
Uniprot/SPTREMBL	F1QYB9, F1QYB9_DANRE, Q8QHI1, Q8QHI1_DANRE, X1WHS2, X1WHS2_DANRE