D. rerio Gene: cgnl1 - ENSDARG00000015805 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015805
Namecgnl1
Descriptioncingulin-like 1 [Source:ZFIN;Acc:ZDB-GENE-071009-2]
OrganismDanio rerio (zebrafish)
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
1.12e3
  • 1.12e3
  • 1.56e3
  • 2.00e3
  • 3.22e3
  • 3.46e3
  • 3.78e3
  • 3.83e3
  • 3.91e3
  • 4.00e3
  • 4.17e3
  • 4.57e3
  • 6.65e3
  • 6.96e3
  • 1.04e4
96.25
  • 96.25
  • 94.76
  • 93.29
  • 89.21
  • 88.40
  • 87.35
  • 87.18
  • 86.91
  • 86.60
  • 86.04
  • 84.70
  • 77.75
  • 76.71
  • 65.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.59e3
  • 1.59e3
  • 2.27e3
94.66
  • 94.66
  • 92.41
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.65e3
  • 1.65e3
94.46
  • 94.46
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
  • 7.49e3
93.21
  • 93.21
  • 74.92
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.56e3
  • 2.56e3
  • 3.77e3
  • 3.87e3
  • 7.66e3
  • 8.44e3
91.42
  • 91.42
  • 87.39
  • 87.03
  • 74.36
  • 71.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
2.68e3
  • 2.68e3
  • 3.52e3
  • 5.42e3
  • 6.38e3
  • 7.18e3
  • 7.58e3
91.01
  • 91.01
  • 88.22
  • 81.85
  • 78.64
  • 75.94
  • 74.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
3.38e3
  • 3.38e3
  • 3.68e3
  • 3.85e3
  • 4.73e3
  • 4.97e3
  • 5.28e3
  • 6.82e3
  • 8.11e3
  • 9.29e3
  • 9.51e3
88.70
  • 88.70
  • 87.69
  • 87.09
  • 84.16
  • 83.37
  • 82.34
  • 77.16
  • 72.84
  • 68.89
  • 68.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.72e3
  • 3.72e3
87.56
  • 87.56
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
3.84e3
  • 3.84e3
  • 4.50e3
  • 7.53e3
  • 8.23e3
87.13
  • 87.13
  • 84.95
  • 74.79
  • 72.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.97
  • 86.97
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.00e3
  • 4.00e3
86.60
  • 86.60
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.37e3
  • 4.37e3
85.38
  • 85.38
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.22e3
  • 5.22e3
82.51
  • 82.51
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.32e3
  • 5.32e3
82.17
  • 82.17
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.59e3
  • 5.59e3
81.29
  • 81.29
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.95e3
  • 5.95e3
80.06
  • 80.06
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.46e3
  • 6.46e3
78.37
  • 78.37
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
6.48e3
  • 6.48e3
  • 8.62e3
  • 1.05e4
78.32
  • 78.32
  • 71.12
  • 64.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.13e3
  • 7.13e3
76.14
  • 76.14
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.37e3
  • 7.37e3
75.33
  • 75.33
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.56e3
  • 7.56e3
74.69
  • 74.69
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.72e3
  • 7.72e3
74.15
  • 74.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.80e3
  • 7.80e3
73.87
  • 73.87
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.97e3
  • 7.97e3
73.32
  • 73.32
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.60e3
  • 8.60e3
71.20
  • 71.20
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.76e3
  • 8.76e3
  • 1.36e4
70.67
  • 70.67
  • 54.49
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.06e3
  • 9.06e3
69.67
  • 69.67
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.11e3
  • 9.11e3
69.49
  • 69.49
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.90e3
  • 9.90e3
66.86
  • 66.86
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.75
  • 65.75
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.20
  • 58.20
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.22
  • 51.22
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000015805 (cgnl1)
ZFINZDB-GENE-071009-2 (cgnl1)
EMBLBX323544, BX324153
Uniprot/SPTREMBLF1R1I5, F1R1I5_DANRE

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