D. rerio Gene: sesn3 - ENSDARG00000015822 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015822
Namesesn3
Descriptionsestrin 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2924]
OrganismDanio rerio (zebrafish)
Synonym(s)cb261, sb:cb261, wu:fb77c04, wu:fc41d03, wu:fd59d12, zgc:56722
Orthologs(s)25 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
317
  • 317
  • 354
  • 402
  • 427
  • 781
  • 1.55e3
  • 2.87e3
  • 3.07e3
  • 3.63e3
  • 3.64e3
  • 3.88e3
  • 4.16e3
  • 5.10e3
  • 1.45e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
98.94
  • 98.94
  • 98.82
  • 98.66
  • 98.57
  • 97.39
  • 94.82
  • 90.39
  • 89.72
  • 87.84
  • 87.82
  • 87.01
  • 86.06
  • 82.92
  • 51.42
  • 50.25
  • 49.95
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
565
  • 565
  • 841
  • 854
  • 1.04e3
  • 1.14e3
  • 1.18e3
98.11
  • 98.11
  • 97.19
  • 97.14
  • 96.52
  • 96.17
  • 96.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.61e3
  • 1.61e3
  • 1.94e3
  • 2.40e3
  • 2.94e3
  • 3.97e3
  • 4.15e3
  • 4.94e3
  • 5.38e3
  • 7.26e3
  • 7.65e3
94.61
  • 94.61
  • 93.50
  • 91.98
  • 90.14
  • 86.71
  • 86.11
  • 83.47
  • 81.98
  • 75.69
  • 74.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.12e3
  • 3.12e3
89.57
  • 89.57
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.25e3
  • 3.25e3
89.13
  • 89.13
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.59e3
  • 3.59e3
87.98
  • 87.98
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.91e3
  • 3.91e3
  • 5.84e3
86.92
  • 86.92
  • 80.43
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
4.34e3
  • 4.34e3
  • 4.68e3
  • 4.77e3
85.46
  • 85.46
  • 84.34
  • 84.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
4.67e3
  • 4.67e3
  • 4.75e3
  • 1.63e4
84.37
  • 84.37
  • 84.11
  • 45.27
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.25e3
  • 5.25e3
82.41
  • 82.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.27e3
  • 5.27e3
82.34
  • 82.34
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.42e3
  • 5.42e3
81.86
  • 81.86
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
5.57e3
  • 5.57e3
  • 7.03e3
  • 9.96e3
  • 1.36e4
81.36
  • 81.36
  • 76.45
  • 66.67
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.35e3
  • 6.35e3
78.72
  • 78.72
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.64e3
  • 6.64e3
77.77
  • 77.77
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
77.52
  • 77.52
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
  • 7.41e3
76.30
  • 76.30
  • 75.18
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
  • 7.38e3
75.83
  • 75.83
  • 75.29
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.45e3
  • 7.45e3
75.05
  • 75.05
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.54e3
  • 7.54e3
74.75
  • 74.75
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.65e3
  • 8.65e3
71.03
  • 71.03
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
  • 1.14e4
  • 1.15e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.21e4
  • 1.23e4
  • 1.23e4
69.99
  • 69.99
  • 69.99
  • 69.99
  • 66.65
  • 61.75
  • 61.53
  • 60.70
  • 60.70
  • 60.70
  • 60.70
  • 59.36
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.21e3
  • 9.21e3
69.15
  • 69.15
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
9.31e3
  • 9.31e3
  • 1.08e4
  • 1.27e4
  • 1.29e4
68.82
  • 68.82
  • 63.89
  • 57.52
  • 56.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.89e3
  • 9.89e3
66.88
  • 66.88
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.14e4
  • 1.14e4
61.71
  • 61.71
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.26e4
  • 1.26e4
57.90
  • 57.90
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.39e4
  • 1.39e4
53.30
  • 53.30
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.37
  • 45.37
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.84
  • 39.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000015822.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression
Bilateria3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000015822.

Cross-references

EnsemblENSDARG00000015822 (sesn3)
ZFINZDB-GENE-040426-2924 (sesn3)
EMBLCR387932
Uniprot/SPTREMBLF1R1P4, F1R1P4_DANRE

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