D. rerio Gene: chata - ENSDARG00000015854 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015854
Namechata
Descriptioncholine O-acetyltransferase a [Source:ZFIN;Acc:ZDB-GENE-080102-2]
OrganismDanio rerio (zebrafish)
Synonym(s)baj, chat
Orthologs(s)24 orthologs
Paralog(s)10 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
2.87e3
  • 2.87e3
90.40
  • 90.40
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
5.95e3
  • 5.95e3
  • 1.23e4
  • 1.60e4
  • 1.86e4
  • 1.97e4
80.08
  • 80.08
  • 58.73
  • 46.31
  • 37.67
  • 34.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.56e3
  • 6.56e3
78.02
  • 78.02
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.04e4
  • 1.04e4
  • 1.24e4
65.19
  • 65.19
  • 58.51
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.10e4
  • 1.10e4
  • 1.60e4
63.16
  • 63.16
  • 46.39
AEIR
  • AEIR
  • AEIR
UBERON:0005569rhombomere 2
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000033Hatching:Long-pec
1.33e4
  • 1.33e4
55.55
  • 55.55
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
1.34e4
  • 1.34e4
  • 1.49e4
54.97
  • 54.97
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000033Hatching:Long-pec
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.01
  • 53.01
AEIR
  • AEIR
CL:0000533primary motor neuron
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0001904habenula
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.68
  • 45.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000015854.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta10 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000015854.

Cross-references

EnsemblENSDARG00000015854 (chata)
ZFINZDB-GENE-080102-2 (chata)
EMBLEU660883
Uniprot/SWISSPROTB2ZGJ1, CLAT_DANRE

Do not show this banner again