D. rerio Gene: npas3b - ENSDARG00000015876 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015876
Namenpas3b
Descriptionneuronal PAS domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-060503-934]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkeyp-13e2.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.11e4
  • 1.11e4
  • 1.23e4
  • 1.52e4
  • 1.75e4
  • 1.77e4
62.99
  • 62.99
  • 58.69
  • 49.05
  • 41.34
  • 40.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.97
  • 56.97
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.35e4
  • 1.35e4
  • 2.09e4
54.96
  • 54.96
  • 30.15
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
  • 2.31e4
52.25
  • 52.25
  • 22.66
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.72e4
  • 1.72e4
42.32
  • 42.32
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.31e4
  • 2.31e4
22.68
  • 22.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000015876 (npas3b)
ZFINZDB-GENE-060503-934 (npas3b)
EMBLBX296539
Uniprot/SPTREMBLQ1LXP7, Q1LXP7_DANRE

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