Gene: npas3b - ENSDARG00000015876 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000015876
Name	npas3b
Description	neuronal PAS domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-060503-934]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:dkeyp-13e2.1

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000037Larval:Day 5 ZFS:0000029Pharyngula:Prim-5	1.11e4 1.11e4 1.23e4 1.41e4 1.75e4 1.77e4	62.64435 62.64435 58.30531 52.48171 40.78759 40.11874	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.31e4 1.31e4	55.69732 55.69732	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.43e4 1.43e4 2.31e4	51.80817 51.80817 21.93737	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.72e4 1.72e4	41.77882 41.77882	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.31e4 2.31e4	21.95427 21.95427	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Cross-references

EMBL	BX296539
Ensembl	ENSDARG00000015876 (npas3b)
Uniprot/SPTREMBL	Q1LXP7, Q1LXP7_DANRE
ZFIN	ZDB-GENE-060503-934 (npas3b)