D. rerio Gene: matn4 - ENSDARG00000015947 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015947
Namematn4
Descriptionmatrilin 4 [Source:ZFIN;Acc:ZDB-GENE-050208-64]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7137546, matrilin-4
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
729
  • 729
  • 755
  • 1.02e3
  • 1.07e3
  • 1.84e3
  • 1.90e3
  • 4.07e3
  • 1.24e4
  • 1.49e4
97.56
  • 97.56
  • 97.48
  • 96.59
  • 96.40
  • 93.84
  • 93.63
  • 86.37
  • 58.47
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
943
  • 943
  • 9.51e3
96.85
  • 96.85
  • 68.16
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.29e3
  • 1.29e3
  • 1.39e3
  • 1.43e3
95.67
  • 95.67
  • 95.36
  • 95.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
  • 1.14e4
93.20
  • 93.20
  • 61.70
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
2.22e3
  • 2.22e3
  • 2.23e3
  • 2.50e3
  • 3.73e3
  • 4.03e3
  • 5.68e3
  • 9.13e3
  • 9.18e3
  • 1.35e4
  • 1.46e4
  • 1.51e4
  • 1.65e4
92.58
  • 92.58
  • 92.54
  • 91.65
  • 87.50
  • 86.51
  • 80.99
  • 69.43
  • 69.26
  • 54.83
  • 51.01
  • 49.30
  • 44.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.40e3
  • 2.40e3
  • 6.44e3
91.95
  • 91.95
  • 78.45
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.13e3
  • 3.13e3
89.53
  • 89.53
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.20e3
  • 3.20e3
89.28
  • 89.28
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.30e3
  • 3.30e3
88.95
  • 88.95
AEIR
  • AEIR
UBERON:0007390pectoral appendage cartilage tissue
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.73e3
  • 3.73e3
  • 3.73e3
87.50
  • 87.50
  • 87.50
AEIR
  • AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.27e3
  • 4.27e3
  • 4.27e3
  • 8.30e3
  • 9.33e3
85.71
  • 85.71
  • 85.71
  • 72.22
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.43e3
  • 4.43e3
  • 9.48e3
85.18
  • 85.18
  • 68.27
AEIR
  • AEIR
  • AEIR
UBERON:0008895splanchnocranium
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.60e3
  • 5.60e3
  • 5.60e3
81.25
  • 81.25
  • 81.25
AEIR
  • AEIR
  • AEIR
UBERON:0002241chondrocranium
  • ZFS:0000037Larval:Day 5
5.97e3
  • 5.97e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
5.97e3
  • 5.97e3
  • 6.22e3
  • 6.89e3
  • 7.47e3
80.00
  • 80.00
  • 79.16
  • 76.92
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.15e3
  • 6.15e3
  • 7.03e3
  • 8.79e3
  • 9.34e3
79.40
  • 79.40
  • 76.46
  • 70.57
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.80e3
  • 6.80e3
77.23
  • 77.23
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
8.40e3
  • 8.40e3
  • 8.79e3
  • 9.71e3
71.86
  • 71.86
  • 70.57
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000037Larval:Day 5
8.53e3
  • 8.53e3
71.43
  • 71.43
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.75e3
  • 8.75e3
70.69
  • 70.69
AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
69.99
  • 69.99
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
9.75e3
  • 9.75e3
  • 1.05e4
  • 1.07e4
67.37
  • 67.37
  • 64.97
  • 64.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
67.37
  • 67.37
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.95
  • 62.95
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
1.14e4
  • 1.14e4
  • 1.25e4
61.88
  • 61.88
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.04
  • 59.04
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.27
  • 58.27
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
1.26e4
  • 1.26e4
57.87
  • 57.87
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
1.29e4
  • 1.29e4
56.86
  • 56.86
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.35
  • 53.35
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.39e4
  • 1.39e4
53.33
  • 53.33
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.57e4
  • 1.57e4
  • 1.75e4
47.32
  • 47.32
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.54
  • 46.54
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.53
  • 46.53
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.07
  • 42.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000015947.

Cross-references

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