D. rerio Gene: cldnc - ENSDARG00000015955 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015955
Namecldnc
Descriptionclaudin c [Source:ZFIN;Acc:ZDB-GENE-010328-3]
OrganismDanio rerio (zebrafish)
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
399
  • 399
98.67
  • 98.67
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.04e3
  • 1.04e3
96.53
  • 96.53
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.10e3
  • 1.10e3
96.32
  • 96.32
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.62e3
  • 3.62e3
  • 8.71e3
  • 8.96e3
  • 1.12e4
  • 1.21e4
87.88
  • 87.88
  • 70.82
  • 69.99
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.52e3
  • 4.52e3
  • 1.50e4
84.86
  • 84.86
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.82e3
  • 4.82e3
  • 6.44e3
  • 6.89e3
83.86
  • 83.86
  • 78.43
  • 76.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
5.88e3
  • 5.88e3
  • 8.89e3
  • 9.43e3
  • 1.14e4
  • 1.18e4
  • 1.24e4
  • 1.27e4
  • 1.33e4
  • 1.33e4
  • 1.33e4
  • 1.35e4
  • 1.42e4
  • 1.42e4
  • 1.44e4
  • 1.45e4
80.30
  • 80.30
  • 70.22
  • 68.44
  • 61.97
  • 60.40
  • 58.55
  • 57.52
  • 55.59
  • 55.51
  • 55.44
  • 54.73
  • 52.58
  • 52.43
  • 51.82
  • 51.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
77.81
  • 77.81
AEIR
  • AEIR
ZFA:0005738intestinal bulb primordium (Danio)
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.47e3
75.00
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
7.64e3
  • 7.64e3
  • 8.01e3
  • 8.69e3
  • 8.77e3
  • 9.14e3
  • 1.02e4
  • 1.09e4
  • 1.10e4
  • 1.28e4
  • 1.62e4
74.43
  • 74.43
  • 73.19
  • 70.91
  • 70.64
  • 69.39
  • 65.86
  • 63.57
  • 63.27
  • 56.99
  • 45.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.03e3
  • 8.03e3
73.10
  • 73.10
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.38e3
  • 8.38e3
  • 2.03e4
71.94
  • 71.94
  • 31.96
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
8.40e3
  • 8.40e3
  • 9.39e3
  • 9.47e3
  • 1.47e4
71.88
  • 71.88
  • 68.54
  • 68.28
  • 50.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.55e3
  • 8.55e3
71.37
  • 71.37
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
8.96e3
  • 8.96e3
  • 9.19e3
  • 9.19e3
  • 9.60e3
  • 9.60e3
  • 1.12e4
  • 1.17e4
  • 1.42e4
69.99
  • 69.99
  • 69.22
  • 69.22
  • 67.85
  • 67.85
  • 62.48
  • 60.70
  • 52.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005721pronephric mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
9.33e3
  • 9.33e3
  • 9.96e3
  • 9.96e3
68.74
  • 68.74
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.53e3
  • 9.53e3
68.09
  • 68.09
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.99e3
  • 9.99e3
66.55
  • 66.55
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
1.01e4
  • 1.01e4
  • 1.02e4
66.02
  • 66.02
  • 65.96
AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000026Segmentation:14-19 somites
1.08e4
  • 1.08e4
63.87
  • 63.87
AEIR
  • AEIR
UBERON:2001076intestinal bulb
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.09e4
  • 1.09e4
  • 1.16e4
63.63
  • 63.63
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.33
  • 61.33
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
57.28
  • 57.28
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.82
  • 55.82
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.47
  • 55.47
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.37e4
  • 1.37e4
  • 1.73e4
54.28
  • 54.28
  • 42.14
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
  • 1.42e4
53.13
  • 53.13
  • 52.44
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.66
  • 49.66
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.15e4
  • 2.15e4
28.02
  • 28.02
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata11 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000015955.

Cross-references

EnsemblENSDARG00000015955 (cldnc)
ZFINZDB-GENE-010328-3 (cldnc)
EMBLAF359432, BC065424, CR847847
Uniprot/SPTREMBLQ90XR2, Q90XR2_DANRE

Do not show this banner again