D. rerio Gene: zgc:86599 - ENSDARG00000015978 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015978
Namezgc:86599
Descriptionzgc:86599 [Source:ZFIN;Acc:ZDB-GENE-040625-180]
OrganismDanio rerio (zebrafish)
Synonym(s)hm:zeh0438, zeh0438
Orthologs(s)22 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
143
  • 143
  • 1.47e3
99.52
  • 99.52
  • 95.10
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
236
  • 236
99.21
  • 99.21
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
247
  • 247
  • 267
  • 270
  • 271
  • 438
  • 447
  • 461
  • 615
  • 650
  • 719
99.18
  • 99.18
  • 99.11
  • 99.10
  • 99.10
  • 98.54
  • 98.51
  • 98.46
  • 97.94
  • 97.83
  • 97.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
267
  • 267
  • 411
99.11
  • 99.11
  • 98.63
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
267
  • 267
99.11
  • 99.11
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
277
  • 277
  • 452
  • 492
99.08
  • 99.08
  • 98.49
  • 98.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
286
  • 286
99.05
  • 99.05
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
345
  • 345
98.85
  • 98.85
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
357
  • 357
98.81
  • 98.81
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
362
  • 362
98.79
  • 98.79
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
367
  • 367
  • 386
  • 831
  • 1.08e3
  • 1.22e3
  • 1.41e3
98.78
  • 98.78
  • 98.71
  • 97.22
  • 96.40
  • 95.92
  • 95.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
390
  • 390
98.70
  • 98.70
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
418
  • 418
  • 500
  • 1.36e3
  • 2.03e3
98.60
  • 98.60
  • 98.33
  • 95.44
  • 93.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
422
  • 422
98.59
  • 98.59
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
426
  • 426
  • 482
  • 515
  • 531
  • 574
  • 591
  • 628
  • 840
  • 865
  • 1.01e3
  • 1.13e3
  • 1.21e3
  • 1.65e3
  • 5.96e3
98.58
  • 98.58
  • 98.39
  • 98.28
  • 98.23
  • 98.08
  • 98.02
  • 97.90
  • 97.19
  • 97.11
  • 96.61
  • 96.23
  • 95.94
  • 94.47
  • 80.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
478
  • 478
98.40
  • 98.40
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
494
  • 494
98.35
  • 98.35
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
556
  • 556
98.14
  • 98.14
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
583
  • 583
98.05
  • 98.05
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
587
  • 587
  • 837
98.04
  • 98.04
  • 97.20
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
645
  • 645
97.84
  • 97.84
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
651
  • 651
97.82
  • 97.82
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
667
  • 667
  • 783
97.77
  • 97.77
  • 97.38
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
707
  • 707
  • 991
  • 1.01e3
  • 1.11e3
  • 1.36e3
97.64
  • 97.64
  • 96.68
  • 96.63
  • 96.28
  • 95.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
956
  • 956
96.80
  • 96.80
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.09e3
  • 1.09e3
96.35
  • 96.35
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
95.49
  • 95.49
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
94.71
  • 94.71
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.97e3
  • 1.97e3
93.40
  • 93.40
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.69e3
  • 3.69e3
87.66
  • 87.66
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.23e3
  • 4.23e3
85.86
  • 85.86
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.06e3
  • 8.06e3
73.01
  • 73.01
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.76
  • 50.76
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000015978.

Cross-references

EnsemblENSDARG00000015978 (zgc:86599)
ZFINZDB-GENE-040625-180 (zgc:86599)
EMBLCT826389
Uniprot/SPTREMBLF1R1J3, F1R1J3_DANRE, F1RCH5, F1RCH5_DANRE

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