D. rerio Gene: wdhd1 - ENSDARG00000015998 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000015998
Namewdhd1
DescriptionWD repeat and HMG-box DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1665]
OrganismDanio rerio (zebrafish)
Synonym(s)and-1, e9qh75, wu:fa11f10, wu:fb77d12, zgc:92585
Orthologs(s)1 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.03e3
  • 1.03e3
96.55
  • 96.55
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
1.90e3
  • 1.90e3
  • 3.56e3
  • 5.41e3
  • 5.49e3
  • 5.53e3
  • 5.67e3
  • 5.71e3
  • 5.84e3
  • 5.91e3
  • 6.02e3
  • 7.62e3
  • 8.20e3
  • 8.40e3
  • 9.58e3
  • 1.08e4
  • 1.44e4
  • 1.49e4
  • 1.50e4
93.64
  • 93.64
  • 88.10
  • 81.89
  • 81.62
  • 81.48
  • 81.03
  • 80.90
  • 80.44
  • 80.23
  • 79.86
  • 74.48
  • 72.55
  • 71.89
  • 67.92
  • 63.80
  • 51.88
  • 50.25
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.05e3
  • 2.05e3
93.15
  • 93.15
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.99e3
  • 2.99e3
  • 6.17e3
89.99
  • 89.99
  • 79.36
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
3.75e3
  • 3.75e3
  • 4.33e3
  • 5.74e3
  • 6.71e3
  • 6.92e3
87.44
  • 87.44
  • 85.50
  • 80.78
  • 77.53
  • 76.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.93e3
  • 3.93e3
  • 4.60e3
  • 4.94e3
  • 5.03e3
  • 7.02e3
  • 7.05e3
  • 7.26e3
  • 7.62e3
  • 1.14e4
  • 1.39e4
86.85
  • 86.85
  • 84.59
  • 83.47
  • 83.16
  • 76.50
  • 76.41
  • 75.70
  • 74.48
  • 61.73
  • 53.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.97e3
  • 3.97e3
86.70
  • 86.70
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
4.47e3
  • 4.47e3
  • 5.81e3
  • 6.38e3
  • 6.68e3
  • 7.09e3
  • 7.13e3
85.05
  • 85.05
  • 80.54
  • 78.64
  • 77.63
  • 76.25
  • 76.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
84.26
  • 84.26
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.19e3
  • 5.19e3
82.62
  • 82.62
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.54e3
  • 5.54e3
  • 1.76e4
81.44
  • 81.44
  • 41.21
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.60e3
  • 5.60e3
81.25
  • 81.25
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.64e3
  • 5.64e3
81.11
  • 81.11
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.40e3
  • 6.40e3
78.56
  • 78.56
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.54e3
  • 7.54e3
74.76
  • 74.76
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.57e3
  • 7.57e3
74.64
  • 74.64
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.64e3
  • 7.64e3
74.44
  • 74.44
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.05e3
  • 9.05e3
69.72
  • 69.72
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.29e3
  • 9.29e3
  • 2.03e4
68.90
  • 68.90
  • 31.88
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.49e3
  • 9.49e3
68.24
  • 68.24
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
9.54e3
  • 9.54e3
  • 1.16e4
  • 1.33e4
68.05
  • 68.05
  • 61.30
  • 55.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.70e3
  • 9.70e3
67.52
  • 67.52
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.21
  • 66.21
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.31
  • 64.31
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
  • 1.13e4
64.22
  • 64.22
  • 62.04
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.06
  • 63.06
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.67
  • 61.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.60
  • 56.60
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 2.13e4
55.92
  • 55.92
  • 28.75
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.56
  • 48.56
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.01
  • 48.01
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
37.97
  • 37.97
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000015998.

Cross-references

EnsemblENSDARG00000015998 (wdhd1)
ZFINZDB-GENE-030131-1665 (wdhd1)
EMBLCU464134
Uniprot/SPTREMBLE7F296, E7F296_DANRE, F1Q7G1, F1Q7G1_DANRE, K7DYL0, K7DYL0_DANRE

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