D. rerio Gene: rab5b - ENSDARG00000016059 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016059
Namerab5b
DescriptionRAB5B, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040426-2593]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:76978
Orthologs(s)1 orthologs
Paralog(s)100 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.23e3
  • 2.23e3
92.53
  • 92.53
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.34e3
  • 2.34e3
92.17
  • 92.17
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
2.61e3
  • 2.61e3
  • 2.83e3
91.28
  • 91.28
  • 90.53
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
2.68e3
  • 2.68e3
  • 5.22e3
91.02
  • 91.02
  • 82.54
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.79
  • 89.79
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
3.85e3
  • 3.85e3
  • 5.71e3
  • 6.07e3
  • 6.47e3
  • 7.49e3
87.12
  • 87.12
  • 80.89
  • 79.69
  • 78.33
  • 74.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.02e3
  • 4.02e3
  • 4.58e3
86.53
  • 86.53
  • 84.68
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.21e3
  • 4.21e3
85.90
  • 85.90
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.40e3
  • 4.40e3
85.28
  • 85.28
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.41e3
  • 4.41e3
85.25
  • 85.25
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.45e3
  • 4.45e3
85.11
  • 85.11
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.89
  • 84.89
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.55e3
  • 4.55e3
84.77
  • 84.77
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.57e3
  • 4.57e3
84.71
  • 84.71
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.87e3
  • 4.87e3
  • 5.27e3
83.71
  • 83.71
  • 82.37
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
83.21
  • 83.21
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
5.04e3
  • 5.04e3
  • 6.36e3
  • 1.21e4
83.14
  • 83.14
  • 78.72
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.50e3
  • 5.50e3
81.60
  • 81.60
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.78e3
  • 5.78e3
80.63
  • 80.63
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.29e3
  • 6.29e3
78.94
  • 78.94
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
78.54
  • 78.54
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.02e3
  • 7.02e3
76.50
  • 76.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.71e3
  • 7.71e3
74.17
  • 74.17
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.71e3
  • 8.71e3
70.84
  • 70.84
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.50e4
55.16
  • 55.16
  • 49.94
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000016059.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta3 genesCompare expression
Eukaryota100 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000016059.

Cross-references

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