Gene: slc6a2 - ENSDARG00000016141 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000016141
Name	slc6a2
Description	solute carrier family 6 (neurotransmitter transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-110408-4]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:dkey-182h7.3
Orthologs(s)	18 orthologs
Paralog(s)	29 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.17e3 1.17e3	96.08 96.08	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	4.63e3 4.63e3	84.48 84.48	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	5.93e3 5.93e3	80.16 80.16	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.02e4 1.02e4	65.82 65.82	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.04e4 1.04e4 1.28e4	65.21 65.21 56.99	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	1.09e4 1.09e4 1.65e4	63.38 63.38 44.72	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.25e4 1.25e4	58.15 58.15	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.32e4 1.32e4	55.67 55.67	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec UBERON:0004707pharyngula stage UBERON:0000068embryo stage	1.34e4 1.34e4 1.93e4 1.97e4 2.02e4 2.13e4	55.27 55.27 35.45 34.17 32.50 28.65	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.51e4 1.51e4 2.11e4	49.58 49.58 29.50	AEIR AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.58e4 1.58e4	46.98 46.98	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.64e4 1.64e4	45.04 45.04	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.66e4 1.66e4	44.47 44.47	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.69e4 1.69e4	43.38 43.38	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.76e4 1.76e4	40.92 40.92	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000103546 SLC6A2 ENSMUSG00000055368 Slc6a2 ENSPTRG00000008126 SLC6A2 ENSGGOG00000005154 SLC6A2 ENSMMUG00000020238 SLC6A2 ENSRNOG00000016311 Slc6a2 ENSBTAG00000003353 SLC6A2 ENSSSCG00000002827 SLC6A2 ENSECAG00000011520 SLC6A2 ENSOCUG00000017310 SLC6A2 ENSCAFG00000009395 SLC6A2 ENSFCAG00000014317 SLC6A2 ENSCPOG00000002271 SLC6A2 ENSEEUG00000014442 SLC6A2 ENSOANG00000011092 SLC6A2 ENSGALG00000003560 SLC6A2 ENSACAG00000016675 SLC6A2 ENSXETG00000002785 slc6a2	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000016141.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	1 gene ENSDARG00000004219 SLC6A3	Compare expression	[+]
Eukaryota	29 genes ENSDARG00000000730 slc6a13 ENSDARG00000001354 slc6a13l ENSDARG00000002405 si:ch211-225b11.1 ENSDARG00000004219 SLC6A3 ENSDARG00000012534 slc6a6a ENSDARG00000018534 slc6a9 ENSDARG00000018621 slc6a19a.1 ENSDARG00000029866 slc6a14 ENSDARG00000030006 SLC6A7 ENSDARG00000039647 slc6a1b ENSDARG00000041205 slc6a1l ENSDARG00000043646 slc6a8 ENSDARG00000045944 slc6a1a ENSDARG00000046091 si:ch211-283g2.1 ENSDARG00000057017 slc6a4b ENSDARG00000061165 slc6a4a ENSDARG00000061480 si:ch211-132b12.1 ENSDARG00000062821 slc6a15 ENSDARG00000067567 SLC6A13 ENSDARG00000068363 si:ch211-132b12.3 ENSDARG00000068372 zgc:158427 ENSDARG00000068387 slc6a18 ENSDARG00000071235 si:ch211-117c9.5 ENSDARG00000074002 slc6a11a ENSDARG00000087981 slc6a11b ENSDARG00000091560 slc6a19a.2 ENSDARG00000094546 si:ch211-132b12.6 ENSDARG00000094946 si:ch211-132b12.2 ENSDARG00000098438 slc6a6b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000016141.

Cross-references

Ensembl	ENSDARG00000016141 (slc6a2)
ZFIN	ZDB-GENE-110408-4 (slc6a2)
EMBL	BX663609
Uniprot/SPTREMBL	F1R3H6, F1R3H6_DANRE, F8W396, F8W396_DANRE