D. rerio Gene: ccdc170 - ENSDARG00000016161 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016161
Nameccdc170
Descriptioncoiled-coil domain containing 170 [Source:ZFIN;Acc:ZDB-GENE-070112-162]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:158867
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.46e3
  • 1.46e3
95.11
  • 95.11
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.51e3
  • 8.51e3
71.51
  • 71.51
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.27
  • 57.27
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.29e4
  • 1.29e4
56.85
  • 56.85
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.92
  • 54.92
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.05
  • 53.05
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.72
  • 50.72
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.70e4
  • 1.70e4
  • 1.75e4
43.06
  • 43.06
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.72e4
  • 1.72e4
42.35
  • 42.35
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.77e4
  • 1.77e4
  • 1.78e4
  • 1.79e4
  • 1.81e4
40.62
  • 40.62
  • 40.56
  • 40.18
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.78e4
  • 1.78e4
  • 1.81e4
40.55
  • 40.55
  • 39.47
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.82e4
  • 1.82e4
39.00
  • 39.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.85
  • 36.85
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.89e4
  • 1.89e4
  • 2.09e4
36.61
  • 36.61
  • 30.08
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.90e4
  • 1.90e4
  • 1.90e4
  • 1.93e4
  • 1.97e4
  • 2.18e4
36.49
  • 36.49
  • 36.40
  • 35.39
  • 34.18
  • 26.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.90e4
  • 1.90e4
36.40
  • 36.40
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.10
  • 36.10
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.52
  • 31.52
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.32
  • 31.32
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.21e4
  • 2.21e4
26.06
  • 26.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000016161.

Cross-references

EnsemblENSDARG00000016161 (ccdc170)
ZFINZDB-GENE-070112-162 (ccdc170)
EMBLBX088649, BX936315
Uniprot/SPTREMBLE7F1G2, E7F1G2_DANRE, F1QI11, F1QI11_DANRE

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