Gene: zgc:112408 - ENSDARG00000016207 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000016207
Name	zgc:112408
Description	zgc:112408 [Source:ZFIN;Acc:ZDB-GENE-050417-63]
Organism	Danio rerio (zebrafish)
Orthologs(s)	16 orthologs
Paralog(s)	4 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	4.49e3 4.49e3	84.97 84.97	AEIR AEIR
UBERON:0000948	heart	[+] 1 stage UBERON:0000066fully formed stage	1.78e4 1.78e4	40.24 40.24	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.97e4 1.97e4	34.13 34.13	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	2.03e4 2.03e4	31.93 31.93	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	2.11e4 2.11e4 2.23e4	29.40 29.40 25.43	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	2.26e4 2.26e4	24.16 24.16	AEIR AEIR
UBERON:0000922	embryo	[+] 1 stage ZFS:0000037Larval:Day 5	2.37e4 2.37e4	20.70 20.70	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	1 species Xenopus tropicalis (western clawed frog)	1 gene ENSXETG00000005844	Compare expression	[+]
Bilateria	8 species Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	16 genes FBgn0030992 CG33253 FBgn0030993 Mec2 WBGene00003166 mec-2 WBGene00006064 sto-2 WBGene00006068 sto-6 ENSXETG00000005844 FBgn0092963 GF15940 FBgn0092964 GF15941 FBgn0137064 GI14311 FBgn0137621 GI14870 FBgn0188981 GD17427 FBgn0188983 GD17429 FBgn0206510 GJ19367 FBgn0206677 GJ19534 FBgn0235220 GE17775 FBgn0235221 GE17776	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000016207.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Bilateria	3 genes ENSDARG00000003835 stom ENSDARG00000057035 stoml3b ENSDARG00000079914 stoml3a	Compare expression	[+]
Eukaryota	4 genes ENSDARG00000003835 stom ENSDARG00000057035 stoml3b ENSDARG00000079914 stoml3a ENSDARG00000103135 stoml2	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000016207.

Cross-references

Ensembl	ENSDARG00000016207 (zgc:112408)
ZFIN	ZDB-GENE-050417-63 (zgc:112408)
EMBL	CT574587
Uniprot/SPTREMBL	F1QP86, F1QP86_DANRE