D. rerio Gene: tfdp1b - ENSDARG00000016304 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016304
Nametfdp1b
Descriptiontranscription factor Dp-1, b [Source:ZFIN;Acc:ZDB-GENE-040426-1746]
OrganismDanio rerio (zebrafish)
Synonym(s)hm:zeh1183, tfdp1, zeh1183, zgc:73281

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
508
  • 508
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
628
  • 628
  • 1.63e3
  • 2.15e3
  • 3.24e3
  • 3.38e3
  • 3.83e3
  • 4.30e3
  • 4.74e3
  • 5.49e3
  • 7.87e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
771
  • 771
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
974
  • 974
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
977
  • 977
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.06e3
  • 1.06e3
  • 1.45e4
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.12e3
  • 1.12e3
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.79e3
  • 1.79e3
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.85e3
  • 1.85e3
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
1.94e3
  • 1.94e3
  • 2.00e3
  • 3.80e3
  • 1.16e4
  • 1.18e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
2.16e3
  • 2.16e3
  • 3.77e3
  • 4.83e3
  • 4.83e3
  • 5.48e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.59e3
  • 2.59e3
  • 3.31e3
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.91e3
  • 2.91e3
  • 7.61e3
  • 8.64e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000106zygote stage
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000036Larval:Day 4
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
3.74e3
  • 3.74e3
  • 3.89e3
  • 4.03e3
  • 4.16e3
  • 4.35e3
  • 4.52e3
  • 5.26e3
  • 5.38e3
  • 5.64e3
  • 5.66e3
  • 6.09e3
  • 6.97e3
  • 7.40e3
  • 7.40e3
  • 7.89e3
  • 7.95e3
  • 8.07e3
  • 8.07e3
  • 8.07e3
  • 8.07e3
  • 8.07e3
  • 8.07e3
  • 8.07e3
  • 8.07e3
  • 8.07e3
  • 8.07e3
  • 8.07e3
  • 8.07e3
  • 8.07e3
  • 8.63e3
  • 8.63e3
  • 8.68e3
  • 9.35e3
  • 9.83e3
  • 9.87e3
  • 9.87e3
  • 9.94e3
  • 1.45e4
  • 1.47e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.95e3
  • 3.95e3
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.00e3
  • 4.00e3
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.47e3
  • 4.47e3
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
4.67e3
  • 4.67e3
  • 1.14e4
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.94e3
  • 4.94e3
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.39e3
  • 5.39e3
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.98e3
  • 5.98e3
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.20e3
  • 6.20e3
  • 9.38e3
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.49e3
  • 6.49e3
  • 1.06e4
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.53e3
  • 6.53e3
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
7.19e3
  • 7.19e3
  • 9.16e3
  • 1.02e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.02e4
  • 1.02e4
  • 1.06e4
  • 1.16e4
  • 1.18e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.23e4
  • 1.23e4
  • 1.30e4
  • 1.31e4
  • 1.32e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
  • 1.40e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.34e4
  • 1.34e4
  • 1.40e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.39e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCU179747, CU929326
EnsemblENSDARG00000016304 (tfdp1b)
Uniprot/SPTREMBLF1R508, F1R508_DANRE, U3JA40, U3JA40_DANRE, U3JA91, U3JA91_DANRE, U3JAR3, U3JAR3_DANRE, U3JAT0, U3JAT0_DANRE
ZFINZDB-GENE-040426-1746 (tfdp1b)

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