D. rerio Gene: tfdp1b - ENSDARG00000016304 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000016304
Nametfdp1b
Descriptiontranscription factor Dp-1, b [Source:ZFIN;Acc:ZDB-GENE-040426-1746]
OrganismDanio rerio (zebrafish)
Synonym(s)hm:zeh1183, tfdp1, zeh1183, zgc:73281

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
508
  • 508
98.30
  • 98.30
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
628
  • 628
  • 1.67e3
  • 2.15e3
  • 3.26e3
  • 3.40e3
  • 3.86e3
  • 4.33e3
  • 4.77e3
  • 5.49e3
  • 7.88e3
97.90
  • 97.90
  • 94.41
  • 92.80
  • 89.09
  • 88.62
  • 87.09
  • 85.51
  • 84.02
  • 81.63
  • 73.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
722
  • 722
  • 1.54e3
  • 2.93e3
  • 7.66e3
  • 8.70e3
97.59
  • 97.59
  • 94.85
  • 90.19
  • 74.34
  • 70.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
771
  • 771
97.42
  • 97.42
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
977
  • 977
96.73
  • 96.73
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.05e3
  • 1.05e3
  • 2.17e3
  • 2.19e3
  • 3.80e3
  • 4.87e3
  • 4.87e3
96.50
  • 96.50
  • 92.73
  • 92.68
  • 87.29
  • 83.71
  • 83.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.06e3
  • 1.06e3
  • 1.47e4
96.46
  • 96.46
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.13e3
  • 1.13e3
96.23
  • 96.23
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.79e3
  • 1.79e3
94.02
  • 94.02
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.80e3
  • 1.80e3
93.96
  • 93.96
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.85e3
  • 1.85e3
93.80
  • 93.80
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
1.95e3
  • 1.95e3
  • 2.02e3
  • 3.83e3
  • 6.05e3
  • 1.17e4
  • 1.20e4
93.47
  • 93.47
  • 93.25
  • 87.17
  • 79.73
  • 60.84
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
2.26e3
  • 2.26e3
  • 6.80e3
  • 1.15e4
92.44
  • 92.44
  • 77.23
  • 61.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.59e3
  • 2.59e3
  • 3.31e3
91.32
  • 91.32
  • 88.92
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.90e3
  • 2.90e3
90.30
  • 90.30
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.70e3
  • 3.70e3
87.63
  • 87.63
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000106zygote stage
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000036Larval:Day 4
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
3.77e3
  • 3.77e3
  • 3.92e3
  • 4.06e3
  • 4.19e3
  • 4.38e3
  • 4.55e3
  • 5.29e3
  • 5.42e3
  • 5.69e3
  • 5.70e3
  • 6.15e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.00e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.71e3
  • 8.71e3
  • 8.74e3
  • 9.42e3
  • 9.90e3
  • 9.96e3
  • 9.96e3
  • 1.00e4
  • 1.46e4
  • 1.49e4
87.39
  • 87.39
  • 86.88
  • 86.42
  • 85.96
  • 85.33
  • 84.76
  • 82.28
  • 81.87
  • 80.95
  • 80.93
  • 79.40
  • 76.46
  • 74.99
  • 74.99
  • 73.32
  • 73.20
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 70.82
  • 70.82
  • 70.75
  • 68.45
  • 66.85
  • 66.65
  • 66.65
  • 66.49
  • 51.01
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.00e3
  • 4.00e3
86.62
  • 86.62
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.35e3
  • 4.35e3
  • 7.24e3
  • 9.22e3
85.44
  • 85.44
  • 75.77
  • 69.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.47e3
  • 4.47e3
85.03
  • 85.03
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.22e3
  • 5.22e3
82.54
  • 82.54
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.39e3
  • 5.39e3
81.97
  • 81.97
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.02e3
  • 6.02e3
79.84
  • 79.84
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
  • 9.45e3
79.10
  • 79.10
  • 68.37
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.53e3
  • 6.53e3
78.12
  • 78.12
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.54e3
  • 6.54e3
  • 1.00e4
78.10
  • 78.10
  • 66.46
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.90e3
  • 7.90e3
73.53
  • 73.53
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.50e3
  • 9.50e3
68.20
  • 68.20
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.03e4
  • 1.03e4
  • 1.07e4
  • 1.17e4
  • 1.20e4
65.37
  • 65.37
  • 64.27
  • 60.70
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.25e4
  • 1.25e4
  • 1.31e4
  • 1.32e4
  • 1.33e4
58.31
  • 58.31
  • 56.23
  • 55.86
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.18
  • 58.18
AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
  • 1.42e4
  • 1.42e4
54.97
  • 54.97
  • 52.60
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.35e4
  • 1.35e4
  • 1.42e4
  • 1.42e4
54.73
  • 54.73
  • 52.60
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.41e4
  • 1.41e4
  • 1.41e4
  • 1.41e4
52.92
  • 52.92
  • 52.92
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.14
  • 39.14
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000016304 (tfdp1b)
ZFINZDB-GENE-040426-1746 (tfdp1b)
EMBLCU179747, CU929326
Uniprot/SPTREMBLF1R508, F1R508_DANRE, U3JA40, U3JA40_DANRE, U3JA91, U3JA91_DANRE, U3JAR3, U3JAR3_DANRE, U3JAT0, U3JAT0_DANRE

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